Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   QSV38_RS06530 Genome accession   NZ_CP128410
Coordinates   1243949..1244707 (+) Length   252 a.a.
NCBI ID   WP_289647064.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1238949..1249707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS06515 (QSV38_06515) - 1241343..1242005 (-) 663 WP_289647062.1 YoaK family protein -
  QSV38_RS06520 (QSV38_06520) rlmH 1242033..1242512 (-) 480 WP_289647063.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  QSV38_RS06525 (QSV38_06525) htrA 1242705..1243886 (+) 1182 WP_277837634.1 trypsin-like peptidase domain-containing protein Regulator
  QSV38_RS06530 (QSV38_06530) spo0J 1243949..1244707 (+) 759 WP_289647064.1 ParB/RepB/Spo0J family partition protein Regulator
  QSV38_RS06535 (QSV38_06535) dnaA 1244909..1246273 (+) 1365 WP_289647065.1 chromosomal replication initiator protein DnaA -
  QSV38_RS06540 (QSV38_06540) dnaN 1246428..1247564 (+) 1137 WP_217374447.1 DNA polymerase III subunit beta -
  QSV38_RS06545 (QSV38_06545) - 1247656..1247907 (+) 252 WP_254451614.1 hypothetical protein -
  QSV38_RS06550 (QSV38_06550) - 1247969..1248310 (+) 342 WP_254451615.1 hypothetical protein -
  QSV38_RS06555 (QSV38_06555) - 1248320..1248523 (+) 204 WP_217374448.1 DUF951 family protein -
  QSV38_RS06560 (QSV38_06560) - 1248625..1248981 (+) 357 WP_174846273.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28979.47 Da        Isoelectric Point: 9.4558

>NTDB_id=847320 QSV38_RS06530 WP_289647064.1 1243949..1244707(+) (spo0J) [Streptococcus parasuis strain 7500]
MEELHYLKIKDIQANPYQPRLHFDEEKLLELAQSIKENGVIQPIIVRRSPVIGFELLAGERRLRASQLAGLTEIPAVIKH
LSDDDLLYQAIIENLQRSDLNPIEEAHSYEKLIEKGLTHDEIAQIMGKSRPYITNLLRLLHLSESTRKAVETGKITQGHA
RQLVALSEKQQAEWVQKIQEKDISVRKLETILSSKKKKTIRKSNQFISEEEEKLAKLLGTKVIIQQKKNGSGQLTIHFQN
IEEFERIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=847320 QSV38_RS06530 WP_289647064.1 1243949..1244707(+) (spo0J) [Streptococcus parasuis strain 7500]
ATGGAAGAACTACACTATCTCAAAATAAAAGACATTCAGGCCAATCCCTATCAACCAAGATTGCATTTTGATGAAGAAAA
ATTATTGGAATTAGCTCAATCTATCAAAGAAAATGGCGTCATTCAACCTATTATTGTTCGCAGATCACCGGTGATTGGTT
TTGAGTTACTTGCTGGTGAAAGACGATTAAGAGCTAGTCAACTAGCGGGATTAACAGAGATTCCAGCAGTCATCAAGCAT
CTATCTGATGATGATTTACTCTACCAAGCTATCATAGAAAACTTACAACGCTCTGACCTCAATCCTATTGAAGAGGCTCA
TTCCTACGAAAAGTTGATAGAAAAAGGCTTAACACATGATGAGATTGCTCAAATCATGGGAAAATCACGACCGTATATCA
CTAATCTTCTTCGTTTACTCCATTTATCCGAATCTACGAGGAAAGCAGTAGAAACAGGAAAAATCACACAAGGGCATGCT
AGACAGCTAGTAGCACTATCAGAGAAACAACAAGCAGAATGGGTTCAAAAAATCCAAGAAAAGGATATCAGCGTACGAAA
GTTAGAAACAATACTATCCTCTAAAAAGAAAAAAACAATTAGAAAATCCAACCAATTTATTTCAGAAGAAGAAGAGAAAT
TAGCAAAACTACTTGGAACCAAAGTAATAATCCAACAAAAGAAAAATGGATCGGGACAACTGACTATTCACTTTCAAAAC
ATCGAAGAATTTGAAAGAATTATCAACAGTCTGAAATAG

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(145-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

54.724

100

0.552