Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   QSV38_RS01155 Genome accession   NZ_CP128410
Coordinates   231235..231906 (-) Length   223 a.a.
NCBI ID   WP_277745712.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 226235..236906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS01130 (QSV38_01130) - 226638..227228 (-) 591 WP_289648864.1 class I SAM-dependent methyltransferase -
  QSV38_RS01135 (QSV38_01135) coaA 227304..228224 (+) 921 WP_289648865.1 type I pantothenate kinase -
  QSV38_RS01140 (QSV38_01140) rpsT 228283..228531 (+) 249 WP_289648866.1 30S ribosomal protein S20 -
  QSV38_RS01145 (QSV38_01145) - 228565..229782 (-) 1218 WP_289648867.1 transglutaminase domain-containing protein -
  QSV38_RS01150 (QSV38_01150) ciaH 229869..231242 (-) 1374 WP_277837162.1 HAMP domain-containing sensor histidine kinase Regulator
  QSV38_RS01155 (QSV38_01155) ciaR 231235..231906 (-) 672 WP_277745712.1 response regulator transcription factor Regulator
  QSV38_RS01160 (QSV38_01160) - 232085..234079 (-) 1995 WP_277837161.1 hypothetical protein -
  QSV38_RS01165 (QSV38_01165) - 234087..235025 (-) 939 WP_277837160.1 glycosyltransferase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25212.84 Da        Isoelectric Point: 4.2459

>NTDB_id=847294 QSV38_RS01155 WP_277745712.1 231235..231906(-) (ciaR) [Streptococcus parasuis strain 7500]
MIKILLIEDDLSLSNSVFDFLDDFADVMQVFDGEEGIYEAETGVYDLILLDLMLPEKDGFQVLKELREKGVSTPVLITTA
KEGLEDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLTYGDVTVDLSTNTTTVNGQEVELLGKEFDLLVY
FLQNQNVILPKTQIFDRIWGFDSDTTISVVEVYVSKVRKKLKGTAFGENLQTLRSVGYILKNV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=847294 QSV38_RS01155 WP_277745712.1 231235..231906(-) (ciaR) [Streptococcus parasuis strain 7500]
ATGATAAAAATATTATTGATCGAAGACGATTTAAGCCTTTCTAATTCAGTCTTTGATTTTTTAGATGATTTTGCAGACGT
TATGCAAGTTTTTGATGGTGAAGAAGGTATTTACGAAGCGGAAACAGGGGTTTATGATTTAATTCTTTTAGATTTAATGT
TACCTGAGAAAGATGGTTTTCAAGTATTAAAAGAATTGCGTGAAAAAGGGGTCTCAACTCCCGTTCTGATTACGACAGCC
AAGGAAGGCCTAGAGGATAAAGGACATGGGTTTGAACTGGGTGCAGATGACTATCTCACAAAACCATTCTATTTAGAAGA
ACTCAAAATGCGTATTCAAGCCTTGTTAAAACGAGCAGGGAAATTCAATGAAAATACTCTAACATACGGAGATGTTACTG
TCGACTTATCTACAAATACTACGACAGTCAATGGTCAAGAAGTAGAATTGTTAGGGAAAGAGTTCGATTTGTTGGTATAT
TTCTTACAGAACCAAAATGTGATTTTACCAAAAACACAGATTTTTGATCGTATTTGGGGATTTGATAGTGATACAACCAT
TTCAGTTGTTGAAGTTTACGTATCGAAAGTAAGGAAAAAATTGAAAGGAACTGCATTTGGAGAAAATCTTCAAACTCTTC
GTAGTGTCGGTTACATTTTGAAAAATGTCTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-220)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

88.789

100

0.888
  ciaR Streptococcus pneumoniae Rx1

88.341

100

0.883
  ciaR Streptococcus pneumoniae D39

88.341

100

0.883
  ciaR Streptococcus pneumoniae R6

88.341

100

0.883
  ciaR Streptococcus pneumoniae TIGR4

88.341

100

0.883
  covR Lactococcus lactis subsp. lactis strain DGCC12653

38.053

100

0.386
  vicR Streptococcus mutans UA159

34.615

100

0.363