Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   QSV38_RS01150 Genome accession   NZ_CP128410
Coordinates   229869..231242 (-) Length   457 a.a.
NCBI ID   WP_277837162.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 224869..236242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS01125 (QSV38_01125) - 225364..226641 (-) 1278 WP_289648862.1 pyrimidine-nucleoside phosphorylase -
  QSV38_RS01130 (QSV38_01130) - 226638..227228 (-) 591 WP_289648864.1 class I SAM-dependent methyltransferase -
  QSV38_RS01135 (QSV38_01135) coaA 227304..228224 (+) 921 WP_289648865.1 type I pantothenate kinase -
  QSV38_RS01140 (QSV38_01140) rpsT 228283..228531 (+) 249 WP_289648866.1 30S ribosomal protein S20 -
  QSV38_RS01145 (QSV38_01145) - 228565..229782 (-) 1218 WP_289648867.1 transglutaminase domain-containing protein -
  QSV38_RS01150 (QSV38_01150) ciaH 229869..231242 (-) 1374 WP_277837162.1 HAMP domain-containing sensor histidine kinase Regulator
  QSV38_RS01155 (QSV38_01155) ciaR 231235..231906 (-) 672 WP_277745712.1 response regulator transcription factor Regulator
  QSV38_RS01160 (QSV38_01160) - 232085..234079 (-) 1995 WP_277837161.1 hypothetical protein -
  QSV38_RS01165 (QSV38_01165) - 234087..235025 (-) 939 WP_277837160.1 glycosyltransferase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 51540.69 Da        Isoelectric Point: 5.1184

>NTDB_id=847293 QSV38_RS01150 WP_277837162.1 229869..231242(-) (ciaH) [Streptococcus parasuis strain 7500]
MSKRFKKIISTDKFSFFIRYFAVFTLIFGLMTAIIFQLMRSTMYQTSDSTLARIKDAPALVVGFAIARTYEPNSEFIIQD
GNIADESDSAESNSDTQNSPKNQKDDQLKLGYNTHVLLYSKDGQVVNPDNFTGLSDLSLDKKNLGEIKEVTVDSTFGSSE
DYRYVTIELAPDDLGYYSSYDIKYATIFVNVSQIKSSIETYETAVAIVMVSAWLISILASIYLSNLSMRPILISYQKQKD
FVENASHELRTPLAVLQNRLEGLFRHPNATILESSESIGSSLEEVRNMRMLTTNLLNLARRDDGFKLDIVEVPPSYFDEI
FENYMMIADENGKTVTVNNLIDQPIRTDKVLVKQLLTILFDNAMKYTEEDGAIQVTANIKDKLVYFTVADNGLGISDSDK
KKIFDRFYRVDKARTRSKGGFGLGLSLALQISNSLKGTITVRDNQPKGTIFEVRLPR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=847293 QSV38_RS01150 WP_277837162.1 229869..231242(-) (ciaH) [Streptococcus parasuis strain 7500]
ATGTCTAAGCGATTTAAAAAAATCATTTCAACAGATAAATTTTCCTTTTTTATCAGATATTTTGCTGTTTTTACACTCAT
TTTCGGATTAATGACCGCCATTATCTTCCAGTTAATGCGCTCAACTATGTATCAGACTTCTGATTCAACACTGGCTCGTA
TCAAAGATGCCCCTGCTTTGGTGGTTGGTTTTGCCATTGCACGAACCTATGAACCAAATTCAGAATTCATTATTCAAGAT
GGAAATATTGCTGATGAAAGTGATTCTGCTGAATCTAATTCAGATACACAAAACTCCCCTAAAAATCAGAAAGACGATCA
GTTGAAACTTGGTTACAATACACATGTATTGCTTTATTCAAAAGATGGTCAAGTAGTTAACCCTGATAACTTTACCGGTT
TGTCTGATTTATCCTTAGACAAGAAAAATTTAGGCGAAATAAAGGAAGTAACGGTTGATTCTACATTCGGGAGTTCAGAA
GATTATCGTTATGTTACTATTGAATTGGCGCCAGATGACCTTGGCTATTATTCTTCCTATGATATTAAATACGCGACAAT
TTTCGTGAATGTGAGTCAGATAAAATCATCCATTGAGACGTATGAAACTGCTGTAGCTATTGTCATGGTATCTGCTTGGC
TTATTTCCATCTTGGCTAGTATTTATCTGTCAAATTTGAGTATGCGACCTATCTTGATTAGCTATCAAAAACAAAAGGAT
TTCGTTGAGAATGCTAGTCATGAATTGAGAACGCCTTTAGCTGTGTTACAGAATCGTTTGGAAGGTCTTTTTAGACATCC
AAATGCAACCATTTTGGAAAGTAGTGAGAGTATAGGATCAAGCCTAGAGGAAGTTCGTAATATGCGTATGTTAACTACGA
ATTTACTGAATTTAGCTCGTCGAGATGATGGTTTCAAATTAGATATAGTTGAAGTCCCACCTAGCTATTTTGATGAAATC
TTTGAGAATTACATGATGATTGCAGATGAAAATGGTAAAACAGTCACGGTTAATAATTTGATTGATCAACCAATTCGGAC
GGATAAGGTGTTGGTAAAACAGCTTCTAACCATCCTGTTTGATAATGCAATGAAGTATACCGAAGAAGATGGCGCTATAC
AAGTGACAGCCAATATCAAAGATAAGTTAGTTTACTTTACGGTAGCGGACAATGGATTGGGTATCAGTGATAGTGATAAA
AAGAAAATTTTCGATCGATTTTATCGTGTAGACAAGGCCCGTACTCGGAGCAAGGGTGGGTTTGGTCTCGGTTTATCCTT
AGCCTTACAAATTTCCAATAGTTTGAAAGGCACAATCACTGTGCGGGATAATCAGCCTAAAGGAACTATTTTTGAGGTAA
GATTACCGAGATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(348-456)

His Kinase A (phospho-acceptor) domain (HisKA)

(238-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus pneumoniae Rx1

51.316

99.781

0.512
  ciaH Streptococcus pneumoniae D39

51.316

99.781

0.512
  ciaH Streptococcus pneumoniae R6

51.316

99.781

0.512
  ciaH Streptococcus pneumoniae TIGR4

51.316

99.781

0.512
  ciaH Streptococcus mutans UA159

50.11

99.125

0.497