Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | K5602_RS09940 | Genome accession | NZ_AP024315 |
| Coordinates | 2034863..2035333 (-) | Length | 156 a.a. |
| NCBI ID | WP_017466775.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain BDH17 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2004044..2057065 | 2034863..2035333 | within | 0 |
Gene organization within MGE regions
Location: 2004044..2057065
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5602_RS13975 | - | 2004044..2004352 (+) | 309 | WP_103146221.1 | hypothetical protein | - |
| K5602_RS09715 | - | 2004331..2004591 (+) | 261 | WP_001791826.1 | hypothetical protein | - |
| K5602_RS09720 (BDH17TP_18290) | scn | 2004644..2004994 (-) | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
| K5602_RS09725 (BDH17TP_18300) | - | 2005679..2006128 (+) | 450 | WP_000727649.1 | chemotaxis-inhibiting protein CHIPS | - |
| K5602_RS09730 (BDH17TP_18310) | - | 2006223..2006561 (-) | 339 | Protein_1894 | SH3 domain-containing protein | - |
| K5602_RS09735 (BDH17TP_18320) | sak | 2007208..2007699 (-) | 492 | WP_000919350.1 | staphylokinase | - |
| K5602_RS09740 (BDH17TP_18330) | - | 2007890..2008645 (-) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| K5602_RS09745 (BDH17TP_18340) | - | 2008657..2008911 (-) | 255 | WP_221062108.1 | phage holin | - |
| K5602_RS09750 | - | 2008963..2009070 (+) | 108 | WP_001791821.1 | hypothetical protein | - |
| K5602_RS09755 (BDH17TP_18350) | pepG1 | 2009123..2009257 (-) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| K5602_RS09760 (BDH17TP_18360) | - | 2009449..2009745 (-) | 297 | WP_000539688.1 | DUF2951 domain-containing protein | - |
| K5602_RS09765 (BDH17TP_18370) | - | 2009803..2010090 (-) | 288 | WP_001040261.1 | hypothetical protein | - |
| K5602_RS09770 (BDH17TP_18380) | - | 2010137..2010289 (-) | 153 | WP_001153681.1 | hypothetical protein | - |
| K5602_RS09775 (BDH17TP_18390) | - | 2010279..2014064 (-) | 3786 | WP_000582165.1 | phage tail spike protein | - |
| K5602_RS09780 (BDH17TP_18400) | - | 2014080..2015564 (-) | 1485 | WP_000567408.1 | phage distal tail protein | - |
| K5602_RS09785 (BDH17TP_18410) | - | 2015561..2020090 (-) | 4530 | WP_103146220.1 | phage tail tape measure protein | - |
| K5602_RS09790 (BDH17TP_18420) | gpGT | 2020147..2020284 (-) | 138 | WP_180992418.1 | phage tail assembly chaperone GT | - |
| K5602_RS09795 (BDH17TP_18430) | gpG | 2020335..2020685 (-) | 351 | WP_001096355.1 | phage tail assembly chaperone G | - |
| K5602_RS09800 | - | 2020735..2020965 (-) | 231 | Protein_1908 | Ig-like domain-containing protein | - |
| K5602_RS09805 (BDH17TP_18450) | - | 2021001..2021645 (-) | 645 | WP_000268740.1 | major tail protein | - |
| K5602_RS09810 (BDH17TP_18460) | - | 2021646..2022053 (-) | 408 | WP_000565498.1 | hypothetical protein | - |
| K5602_RS09815 (BDH17TP_18470) | - | 2022050..2022454 (-) | 405 | WP_000114226.1 | HK97 gp10 family phage protein | - |
| K5602_RS09820 (BDH17TP_18480) | - | 2022451..2022813 (-) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| K5602_RS09825 (BDH17TP_18490) | - | 2022797..2023081 (-) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| K5602_RS09830 (BDH17TP_18500) | - | 2023071..2023355 (-) | 285 | WP_000238236.1 | hypothetical protein | - |
| K5602_RS09835 (BDH17TP_18510) | - | 2023375..2024520 (-) | 1146 | WP_000154559.1 | phage major capsid protein | - |
| K5602_RS09840 (BDH17TP_18520) | - | 2024544..2025281 (-) | 738 | WP_000642728.1 | head maturation protease, ClpP-related | - |
| K5602_RS09845 (BDH17TP_18530) | - | 2025265..2026452 (-) | 1188 | WP_000025274.1 | phage portal protein | - |
| K5602_RS09850 (BDH17TP_18540) | - | 2026468..2028129 (-) | 1662 | WP_103146218.1 | terminase large subunit | - |
| K5602_RS09855 (BDH17TP_18550) | - | 2028126..2028470 (-) | 345 | WP_000402904.1 | hypothetical protein | - |
| K5602_RS09860 (BDH17TP_18560) | - | 2028600..2028899 (-) | 300 | WP_000988330.1 | HNH endonuclease | - |
| K5602_RS09865 (BDH17TP_18570) | - | 2029131..2029547 (-) | 417 | WP_000590122.1 | hypothetical protein | - |
| K5602_RS09870 (BDH17TP_18580) | - | 2029575..2029775 (-) | 201 | WP_103146217.1 | DUF1514 family protein | - |
| K5602_RS09875 (BDH17TP_18590) | - | 2029775..2030425 (-) | 651 | WP_001005262.1 | hypothetical protein | - |
| K5602_RS09880 (BDH17TP_18610) | rinB | 2030584..2030733 (-) | 150 | WP_070030217.1 | transcriptional activator RinB | - |
| K5602_RS09885 (BDH17TP_18620) | - | 2030746..2031204 (-) | 459 | WP_031768021.1 | hypothetical protein | - |
| K5602_RS09890 (BDH17TP_18630) | - | 2031197..2031349 (-) | 153 | WP_031768020.1 | DUF1381 domain-containing protein | - |
| K5602_RS09895 (BDH17TP_18640) | - | 2031386..2031895 (-) | 510 | WP_031866561.1 | dUTP diphosphatase | - |
| K5602_RS09900 (BDH17TP_18650) | - | 2031888..2032070 (-) | 183 | WP_000028421.1 | hypothetical protein | - |
| K5602_RS09905 (BDH17TP_18660) | - | 2032060..2032311 (-) | 252 | WP_001836226.1 | DUF1024 family protein | - |
| K5602_RS09910 (BDH17TP_18670) | - | 2032304..2032675 (-) | 372 | WP_001557190.1 | hypothetical protein | - |
| K5602_RS09915 (BDH17TP_18680) | - | 2032684..2032926 (-) | 243 | WP_000131379.1 | phi PVL orf 51-like protein | - |
| K5602_RS09920 (BDH17TP_18690) | - | 2032930..2033298 (-) | 369 | WP_000101270.1 | SA1788 family PVL leukocidin-associated protein | - |
| K5602_RS09925 (BDH17TP_18700) | - | 2033311..2033715 (-) | 405 | WP_103146216.1 | RusA family crossover junction endodeoxyribonuclease | - |
| K5602_RS09930 (BDH17TP_18710) | - | 2033724..2033942 (-) | 219 | WP_053819389.1 | hypothetical protein | - |
| K5602_RS09935 (BDH17TP_18720) | - | 2033949..2034833 (-) | 885 | WP_103146215.1 | DnaD domain protein | - |
| K5602_RS09940 (BDH17TP_18730) | ssbA | 2034863..2035333 (-) | 471 | WP_017466775.1 | single-stranded DNA-binding protein | Machinery gene |
| K5602_RS09945 (BDH17TP_18740) | - | 2035334..2035951 (-) | 618 | WP_224211742.1 | MBL fold metallo-hydrolase | - |
| K5602_RS09950 (BDH17TP_18750) | - | 2036032..2036952 (-) | 921 | WP_103146214.1 | recombinase RecT | - |
| K5602_RS09955 (BDH17TP_18760) | - | 2036954..2038897 (-) | 1944 | WP_103146213.1 | AAA family ATPase | - |
| K5602_RS09960 (BDH17TP_18770) | - | 2038906..2039169 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| K5602_RS09965 (BDH17TP_18780) | - | 2039178..2039438 (-) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| K5602_RS09970 (BDH17TP_18790) | - | 2039531..2039692 (-) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| K5602_RS09975 (BDH17TP_18800) | - | 2039689..2040009 (-) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| K5602_RS09980 (BDH17TP_18810) | - | 2040068..2040700 (+) | 633 | WP_000275058.1 | hypothetical protein | - |
| K5602_RS09985 (BDH17TP_18820) | - | 2040715..2040855 (-) | 141 | WP_000939496.1 | hypothetical protein | - |
| K5602_RS09990 (BDH17TP_18830) | - | 2040886..2041083 (-) | 198 | WP_001148861.1 | hypothetical protein | - |
| K5602_RS09995 (BDH17TP_18840) | - | 2041099..2041854 (-) | 756 | WP_001148341.1 | phage antirepressor KilAC domain-containing protein | - |
| K5602_RS10000 (BDH17TP_18850) | - | 2041911..2042450 (+) | 540 | WP_000351243.1 | hypothetical protein | - |
| K5602_RS10005 | - | 2042474..2042734 (-) | 261 | Protein_1949 | transcriptional regulator | - |
| K5602_RS10010 (BDH17TP_18860) | - | 2042748..2042990 (-) | 243 | WP_000639927.1 | DUF739 family protein | - |
| K5602_RS10015 (BDH17TP_18870) | - | 2043154..2043870 (+) | 717 | WP_001083967.1 | LexA family transcriptional regulator | - |
| K5602_RS10020 (BDH17TP_18880) | - | 2043882..2044739 (+) | 858 | WP_000804507.1 | HIRAN domain-containing protein | - |
| K5602_RS10025 (BDH17TP_18890) | - | 2044784..2044966 (+) | 183 | WP_000705248.1 | hypothetical protein | - |
| K5602_RS10030 (BDH17TP_18900) | - | 2045066..2045530 (+) | 465 | WP_000825947.1 | hypothetical protein | - |
| K5602_RS10035 (BDH17TP_18910) | - | 2045589..2046626 (+) | 1038 | WP_000857191.1 | site-specific integrase | - |
| K5602_RS10040 (BDH17TP_18920) | sph | 2046683..2047507 (+) | 825 | Protein_1956 | sphingomyelin phosphodiesterase | - |
| K5602_RS10045 (BDH17TP_18930) | - | 2047769..2048785 (-) | 1017 | WP_000595612.1 | leukocidin/hemolysin toxin family protein | - |
| K5602_RS10050 (BDH17TP_18940) | - | 2048807..2049862 (-) | 1056 | WP_000791397.1 | leukocidin family pore-forming toxin | - |
| K5602_RS10055 (BDH17TP_18950) | - | 2050294..2051517 (+) | 1224 | WP_000206618.1 | ArgE/DapE family deacylase | - |
| K5602_RS10060 (BDH17TP_18960) | - | 2051900..2053207 (+) | 1308 | WP_001045074.1 | TrkH family potassium uptake protein | - |
| K5602_RS10065 (BDH17TP_18970) | - | 2053746..2054372 (-) | 627 | WP_000216896.1 | hypothetical protein | - |
| K5602_RS10070 (BDH17TP_18980) | - | 2054369..2054548 (-) | 180 | WP_000201398.1 | hypothetical protein | - |
| K5602_RS10075 (BDH17TP_18990) | groL | 2055089..2056705 (-) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| K5602_RS10080 (BDH17TP_19000) | groES | 2056781..2057065 (-) | 285 | WP_000917289.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17730.57 Da Isoelectric Point: 4.7821
>NTDB_id=84724 K5602_RS09940 WP_017466775.1 2034863..2035333(-) (ssbA) [Staphylococcus aureus strain BDH17]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDNQQDLYQQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDNQQDLYQQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=84724 K5602_RS09940 WP_017466775.1 2034863..2035333(-) (ssbA) [Staphylococcus aureus strain BDH17]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAAATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAAATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.941 |
100 |
0.577 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Neisseria meningitidis MC58 |
34.682 |
100 |
0.385 |
| ssb | Neisseria gonorrhoeae MS11 |
34.682 |
100 |
0.385 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |