Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   K1T30_RS00510 Genome accession   NZ_CP128186
Coordinates   137618..139462 (+) Length   614 a.a.
NCBI ID   WP_284941348.1    Uniprot ID   -
Organism   Bifidobacterium catenulatum strain IMAUFB087     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 132618..144462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T30_RS00485 (K1T30_000485) - 132825..133478 (-) 654 WP_284940805.1 TetR/AcrR family transcriptional regulator -
  K1T30_RS00490 (K1T30_000490) - 133475..134263 (-) 789 Protein_93 YhgE/Pip family protein -
  K1T30_RS00495 (K1T30_000495) - 134283..134933 (+) 651 WP_301436306.1 peptidoglycan bridge formation glycyltransferase FemA/FemB family protein -
  K1T30_RS00500 (K1T30_000500) - 135261..135752 (+) 492 WP_004223035.1 MarR family transcriptional regulator -
  K1T30_RS00505 (K1T30_000505) rcrP 135852..137603 (+) 1752 WP_284941349.1 ABC transporter ATP-binding protein Regulator
  K1T30_RS00510 (K1T30_000510) rcrQ 137618..139462 (+) 1845 WP_284941348.1 ABC transporter ATP-binding protein Regulator
  K1T30_RS00515 (K1T30_000515) - 139523..140584 (-) 1062 WP_284941347.1 FAD:protein FMN transferase -
  K1T30_RS00520 (K1T30_000520) - 140993..142687 (+) 1695 WP_284941409.1 FTR1 family protein -
  K1T30_RS00525 (K1T30_000525) - 142777..143439 (+) 663 WP_284941346.1 iron transporter -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 67454.24 Da        Isoelectric Point: 6.2930

>NTDB_id=846569 K1T30_RS00510 WP_284941348.1 137618..139462(+) (rcrQ) [Bifidobacterium catenulatum strain IMAUFB087]
MARGPMGRSRGPVEKPKDFGGVMSKLAKFCRHYIPVMIFALILGAAGTICQIVGPDKLKDMTNEITKGLPAMVHGRPVMN
SIDMDAVSRIAWLLVALYVGYALLSYLQSWLMANVTQRTAQELREAISKKINRLPLKYFDKVSYGDVLSRITNDVDAIGQ
TLGQSVGSLITSITLFVGALIMMFYNNVIMTLCAIGSALLGLVVMGVIMVASQKYFTRQQIALGDVNGHVEEMYTGHTVV
KAYCGEESSIEQFEKYNDDLYVSGWKSQFLSGLMMPLMNFIGNFGYVVVCVVGAVLAMDGKIEFGVIVAFMMYIRLFTQP
LSQFAQAFQNLQRCAAASERVFGFLEEPELADETGKKALLGVGVDGKPQPVRGDVEFSHVRFGYDPDKTIIHDFSASVKA
GQKVAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGVDTKSVPRWNVHDQFSMVLQDTWVFHGTVRENIAYSKPGVTDEQ
IVAACKAVGLHRYIMSLPNGYDTVLDDKASLSQGQKQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGR
TSFVIAHRLSTIRDADMILVMNGGDIVERGTHEELLARNGFYADIYNSQFTLID

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=846569 K1T30_RS00510 WP_284941348.1 137618..139462(+) (rcrQ) [Bifidobacterium catenulatum strain IMAUFB087]
ATGGCAAGAGGACCAATGGGACGCTCTCGCGGACCCGTGGAAAAGCCGAAGGATTTCGGCGGTGTGATGAGCAAACTGGC
GAAATTCTGCCGTCACTACATTCCTGTGATGATTTTCGCCCTGATTCTGGGTGCAGCCGGCACAATCTGCCAGATTGTCG
GACCGGACAAGCTCAAAGACATGACCAACGAGATCACGAAGGGGCTGCCGGCCATGGTGCATGGCAGGCCGGTCATGAAC
TCGATTGATATGGATGCTGTTTCGCGCATCGCATGGCTGCTTGTCGCGCTGTATGTTGGGTACGCGCTGCTGAGCTACCT
GCAGAGCTGGTTGATGGCCAACGTTACGCAGCGCACCGCCCAGGAGCTGCGTGAGGCGATCAGCAAGAAGATTAATCGCC
TGCCGCTCAAATATTTCGACAAGGTCAGCTACGGCGATGTGCTCAGCCGCATCACCAACGATGTGGACGCGATCGGCCAG
ACGCTCGGCCAGTCGGTCGGCTCGCTGATCACTTCAATCACGCTGTTCGTCGGCGCGCTCATCATGATGTTCTACAACAA
CGTGATCATGACGCTGTGCGCCATCGGTTCCGCGTTGCTTGGCCTGGTGGTCATGGGCGTGATCATGGTCGCCTCGCAGA
AGTACTTCACCCGACAGCAGATCGCGTTGGGAGATGTGAACGGGCACGTTGAGGAAATGTACACCGGCCACACCGTGGTC
AAGGCGTACTGCGGCGAAGAGAGCTCCATCGAACAGTTCGAGAAATACAACGACGATCTGTACGTCTCCGGCTGGAAGAG
CCAGTTCCTCTCCGGCCTGATGATGCCGCTCATGAACTTCATCGGCAACTTCGGTTACGTGGTCGTGTGCGTGGTCGGCG
CGGTGCTGGCCATGGACGGCAAGATCGAATTCGGCGTGATCGTGGCGTTCATGATGTACATTCGCCTGTTCACGCAGCCG
CTTTCCCAGTTCGCGCAGGCGTTCCAGAACCTGCAGCGCTGCGCTGCCGCCTCTGAACGCGTCTTTGGCTTCCTGGAAGA
GCCGGAACTGGCCGATGAGACCGGCAAGAAAGCACTGCTGGGTGTCGGTGTGGATGGCAAGCCGCAGCCGGTGCGTGGCG
ATGTGGAATTCAGCCACGTGCGATTCGGCTACGACCCGGACAAGACGATCATCCACGACTTCTCCGCGTCGGTGAAGGCC
GGTCAGAAGGTGGCCATCGTCGGTCCGACCGGTGCCGGCAAGACCACGATGGTCAACCTGCTGATGCGGTTCTACGAGAT
TTCCGGCGGCACGATTTCGATCGACGGCGTCGACACCAAGTCGGTTCCGCGCTGGAATGTGCACGACCAGTTCTCGATGG
TATTGCAGGACACGTGGGTGTTCCATGGAACGGTGCGTGAAAACATCGCATACTCGAAGCCGGGCGTCACTGACGAGCAG
ATTGTGGCCGCCTGCAAAGCCGTCGGTCTGCACCGCTACATCATGTCTCTGCCGAATGGCTACGACACTGTGCTCGACGA
CAAGGCGTCGCTTTCGCAAGGTCAGAAGCAGCTGCTGACAATCGCCCGCGCCATGGTTGAGGACGCGCCGATTCTGATTC
TAGACGAGGCCACGTCCTCCGTGGATACCCGTACCGAGGAGTTGATTCAGAAGGCCATGGATGCACTGACGGTGGGTCGC
ACGAGCTTTGTGATCGCGCACCGGCTGTCTACCATCCGCGACGCCGACATGATTTTGGTGATGAACGGTGGCGACATTGT
GGAACGCGGCACCCACGAGGAACTGCTCGCTAGAAACGGCTTCTACGCCGACATCTATAACAGCCAGTTTACGCTGATCG
ACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(392-539)

ABC transporter transmembrane region (ABC_membrane)

(38-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.668

96.254

0.536