Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QRA13_RS07005 Genome accession   NZ_CP128184
Coordinates   1501870..1502448 (-) Length   192 a.a.
NCBI ID   WP_224224160.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ0-1 isolate soil     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1496870..1507448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA13_RS06970 (QRA13_06970) - 1497062..1498531 (+) 1470 WP_029325959.1 sodium:solute symporter -
  QRA13_RS06975 (QRA13_06975) - 1498573..1498890 (+) 318 WP_082997805.1 YbjQ family protein -
  QRA13_RS06980 (QRA13_06980) - 1498923..1499192 (-) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  QRA13_RS06985 (QRA13_06985) - 1499388..1500098 (+) 711 WP_082997804.1 YrpD family protein -
  QRA13_RS06990 (QRA13_06990) - 1500327..1500836 (-) 510 WP_130571192.1 MepB family protein -
  QRA13_RS06995 (QRA13_06995) - 1500958..1501329 (-) 372 WP_044802770.1 iron chaperone -
  QRA13_RS07000 (QRA13_07000) - 1501356..1501724 (-) 369 WP_012117235.1 iron chaperone -
  QRA13_RS07005 (QRA13_07005) comK 1501870..1502448 (-) 579 WP_224224160.1 competence protein ComK Regulator
  QRA13_RS07010 (QRA13_07010) - 1502764..1502997 (+) 234 WP_032874382.1 IDEAL domain-containing protein -
  QRA13_RS07015 (QRA13_07015) - 1503028..1503885 (-) 858 WP_038457531.1 SDR family oxidoreductase -
  QRA13_RS07020 (QRA13_07020) - 1504010..1505533 (+) 1524 WP_224224159.1 FAD-dependent oxidoreductase -
  QRA13_RS07025 (QRA13_07025) - 1505656..1506948 (+) 1293 WP_007409192.1 globin-coupled sensor protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22347.64 Da        Isoelectric Point: 8.1419

>NTDB_id=846493 QRA13_RS07005 WP_224224160.1 1501870..1502448(-) (comK) [Bacillus velezensis strain YJ0-1 isolate soil]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHMHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=846493 QRA13_RS07005 WP_224224160.1 1501870..1502448(-) (comK) [Bacillus velezensis strain YJ0-1 isolate soil]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTATGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCGCA
TATGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

81.771

100

0.818