Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QRE67_RS25850 Genome accession   NZ_CP128153
Coordinates   5164737..5165252 (-) Length   171 a.a.
NCBI ID   WP_286122996.1    Uniprot ID   -
Organism   Bacillus sp. DX3.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5159737..5170252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE67_RS25830 (QRE67_25825) rplI 5160833..5161279 (-) 447 WP_286122993.1 50S ribosomal protein L9 -
  QRE67_RS25835 (QRE67_25830) - 5161276..5163249 (-) 1974 WP_286122994.1 DHH family phosphoesterase -
  QRE67_RS25840 (QRE67_25835) - 5163438..5164376 (-) 939 WP_286122995.1 YybS family protein -
  QRE67_RS25845 (QRE67_25840) rpsR 5164456..5164692 (-) 237 WP_020059677.1 30S ribosomal protein S18 -
  QRE67_RS25850 (QRE67_25845) ssbA 5164737..5165252 (-) 516 WP_286122996.1 single-stranded DNA-binding protein Machinery gene
  QRE67_RS25855 (QRE67_25850) rpsF 5165283..5165570 (-) 288 WP_286122997.1 30S ribosomal protein S6 -
  QRE67_RS25860 (QRE67_25855) ychF 5165761..5166861 (-) 1101 WP_286122998.1 redox-regulated ATPase YchF -
  QRE67_RS25865 (QRE67_25860) - 5166978..5167175 (-) 198 WP_286122999.1 DUF951 domain-containing protein -
  QRE67_RS25870 (QRE67_25865) - 5167198..5168055 (-) 858 WP_286123000.1 mechanosensitive ion channel family protein -
  QRE67_RS25875 (QRE67_25870) yyaC 5168386..5168982 (+) 597 WP_286123001.1 spore protease YyaC -
  QRE67_RS25880 (QRE67_25875) - 5169000..5169851 (-) 852 WP_353507050.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18579.36 Da        Isoelectric Point: 4.9222

>NTDB_id=846373 QRE67_RS25850 WP_286122996.1 5164737..5165252(-) (ssbA) [Bacillus sp. DX3.1]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFTNQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAENVQFLEPRNSGGEQRGSFNQQPSGAGYGNQGSNPFGGQSGNPGNSGNSGFTKNDDPFSNVGQ
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=846373 QRE67_RS25850 WP_286122996.1 5164737..5165252(-) (ssbA) [Bacillus sp. DX3.1]
TTGATGAATCGTGTTATACTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCAAATGGTGTTGCAGTAGC
TACTTTCACGTTAGCTGTGAATCGCGCATTTACGAATCAGCAAGGTGAGCGTGAAGCTGACTTTATTAACTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTGGCGAATTATTTGAAAAAGGGTAGTTTAGCGGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAGAACGTACAGTTTTTAGAGCCGCGTAA
TAGCGGTGGTGAGCAACGCGGTTCATTCAATCAGCAGCCCTCAGGAGCTGGTTACGGAAATCAAGGCTCTAACCCATTTG
GTGGTCAATCTGGTAATCCGGGTAACTCAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAA
CCGATCGATATTTCGGACGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.69

100

0.719
  ssb Latilactobacillus sakei subsp. sakei 23K

59.538

100

0.602
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.988

0.398
  ssb Glaesserella parasuis strain SC1401

37.64

100

0.392
  ssb Neisseria meningitidis MC58

34.066

100

0.363
  ssb Neisseria gonorrhoeae MS11

34.066

100

0.363