NTDB

Overview

Name	comFC	Type	Machinery gene
Locus tag	QRD88_RS16255	Genome accession	NZ_CP128114
Coordinates	3136054..3136710 (-)	Length	218 a.a.
NCBI ID	WP_241218534.1	Uniprot ID	-
Organism	Bacillus safensis strain G6S3
Function	ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3131054..3141710

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QRD88_RS16220 (QRD88_16215)	fliW	3131192..3131626 (-)	435	WP_024423615.1	flagellar assembly protein FliW	-
QRD88_RS16225 (QRD88_16220)	-	3131655..3132233 (-)	579	WP_024426253.1	DUF6470 family protein	-
QRD88_RS16230 (QRD88_16225)	flgL	3132280..3133188 (-)	909	WP_024423617.1	flagellar hook-associated protein FlgL	-
QRD88_RS16235 (QRD88_16230)	flgK	3133198..3134718 (-)	1521	WP_286098769.1	flagellar hook-associated protein FlgK	-
QRD88_RS16240 (QRD88_16235)	-	3134734..3135216 (-)	483	WP_286098770.1	flagellar protein FlgN	-
QRD88_RS16245 (QRD88_16240)	flgM	3135235..3135498 (-)	264	WP_024423620.1	flagellar biosynthesis anti-sigma factor FlgM	-
QRD88_RS16250 (QRD88_16245)	-	3135578..3135997 (-)	420	WP_024423621.1	TIGR03826 family flagellar region protein	-
QRD88_RS16255 (QRD88_16250)	comFC	3136054..3136710 (-)	657	WP_241218534.1	ComF family protein	Machinery gene
QRD88_RS16260 (QRD88_16255)	-	3136737..3137030 (-)	294	WP_025093967.1	competence protein ComFB	-
QRD88_RS16265 (QRD88_16260)	comFA	3137079..3138476 (-)	1398	WP_286099159.1	DEAD/DEAH box helicase	Machinery gene
QRD88_RS16270 (QRD88_16265)	-	3138597..3139439 (-)	843	WP_024423625.1	DegV family protein	-
QRD88_RS16275 (QRD88_16270)	degU	3139655..3140344 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
QRD88_RS16280 (QRD88_16275)	degS	3140409..3141584 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

Download Length: 218 a.a. Molecular weight: 24965.09 Da Isoelectric Point: 9.9287

                                >NTDB_id=845985 QRD88_RS16255 WP_241218534.1 3136054..3136710(-) (comFC) [Bacillus safensis strain G6S3]

MPAFTWKSFLLLNDDRLCVACKNHLVKIERPICPTCGRAQSNDQLCQDCNRWNERSDSIKILVKNRSVYTYNELMKDVLA

RFKFRGDTALAELFQKDVQAAFKHSFCIKDPLLIPIPLSHERLKERGFNQSVIIASLLDKPILQPLVKIHQSKQSKKKKN

ERLDQKGLFQIKQTDAIVQRDIILVDDIYTTGATIYDAARILKDAGAKSVSSFTLIRS

Nucleotide

Download Length: 657 bp

                                >NTDB_id=845985 QRD88_RS16255 WP_241218534.1 3136054..3136710(-) (comFC) [Bacillus safensis strain G6S3]

GTGCCTGCTTTTACATGGAAATCATTCCTACTATTAAATGATGATCGCCTTTGTGTAGCATGTAAGAATCACTTAGTAAA

GATTGAGCGTCCTATTTGTCCAACATGCGGAAGGGCGCAGTCAAATGACCAATTGTGCCAGGACTGTAACAGATGGAATG

AACGCTCTGATTCTATTAAAATCCTTGTAAAAAATAGGTCAGTTTATACTTACAACGAGTTGATGAAAGATGTCCTTGCC

CGCTTTAAATTTCGGGGTGATACGGCTTTAGCTGAGCTGTTTCAAAAAGATGTACAAGCAGCATTTAAACATTCCTTCTG

CATAAAAGACCCATTGCTGATACCGATTCCTTTAAGTCATGAAAGACTAAAAGAAAGAGGATTTAATCAGTCCGTGATAA

TCGCTTCTTTGCTAGATAAGCCAATATTGCAGCCACTCGTGAAAATACATCAAAGTAAGCAGTCTAAAAAAAAGAAAAAT

GAACGCCTAGATCAAAAAGGATTGTTTCAAATAAAGCAAACAGATGCGATTGTTCAAAGGGATATTATATTAGTTGATGA

TATCTATACAACGGGAGCAACCATCTATGATGCGGCAAGAATTTTGAAAGACGCAGGTGCTAAAAGTGTTTCTTCTTTTA

CGTTGATACGTAGTTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-49)

Phosphoribosyl transferase domain (Pribosyltran)

(127-216)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comFC	Bacillus subtilis subsp. subtilis str. 168	49.537	99.083	0.491
comFC/cflB	Streptococcus pneumoniae TIGR4	36.744	98.624	0.362
comFC/cflB	Streptococcus pneumoniae Rx1	36.744	98.624	0.362
comFC/cflB	Streptococcus pneumoniae D39	36.744	98.624	0.362
comFC/cflB	Streptococcus pneumoniae R6	36.744	98.624	0.362

Detailed information NTG0845985