Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QRD88_RS16275 Genome accession   NZ_CP128114
Coordinates   3139655..3140344 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain G6S3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3134655..3145344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD88_RS16240 (QRD88_16235) - 3134734..3135216 (-) 483 WP_286098770.1 flagellar protein FlgN -
  QRD88_RS16245 (QRD88_16240) flgM 3135235..3135498 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  QRD88_RS16250 (QRD88_16245) - 3135578..3135997 (-) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  QRD88_RS16255 (QRD88_16250) comFC 3136054..3136710 (-) 657 WP_241218534.1 ComF family protein Machinery gene
  QRD88_RS16260 (QRD88_16255) - 3136737..3137030 (-) 294 WP_025093967.1 competence protein ComFB -
  QRD88_RS16265 (QRD88_16260) comFA 3137079..3138476 (-) 1398 WP_286099159.1 DEAD/DEAH box helicase Machinery gene
  QRD88_RS16270 (QRD88_16265) - 3138597..3139439 (-) 843 WP_024423625.1 DegV family protein -
  QRD88_RS16275 (QRD88_16270) degU 3139655..3140344 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  QRD88_RS16280 (QRD88_16275) degS 3140409..3141584 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  QRD88_RS16285 (QRD88_16280) - 3141805..3142473 (+) 669 WP_012011434.1 YigZ family protein -
  QRD88_RS16290 (QRD88_16285) - 3142458..3143549 (+) 1092 WP_024423626.1 LCP family protein -
  QRD88_RS16295 (QRD88_16290) - 3143585..3144652 (-) 1068 WP_024423627.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=845987 QRD88_RS16275 WP_008348273.1 3139655..3140344(-) (degU) [Bacillus safensis strain G6S3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=845987 QRD88_RS16275 WP_008348273.1 3139655..3140344(-) (degU) [Bacillus safensis strain G6S3]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTAAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGCTAAAAGA
AATGGATGCAGACACACTTATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ATTTAGTAAATGAATTCCGACGCCTAGCGACTAGCGGTGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTTAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996