Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QSG84_RS12130 Genome accession   NZ_CP127893
Coordinates   2604862..2605317 (-) Length   151 a.a.
NCBI ID   WP_317030630.1    Uniprot ID   A0AA97F2D9
Organism   Acinetobacter sp. SAAs470     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2599862..2610317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG84_RS12105 (QSG84_12100) - 2601174..2601725 (+) 552 WP_410487513.1 LemA family protein -
  QSG84_RS16690 - 2601743..2602789 (+) 1047 Protein_2342 TPM domain-containing protein -
  QSG84_RS12120 (QSG84_12115) - 2602783..2603340 (+) 558 WP_317030628.1 TPM domain-containing protein -
  QSG84_RS12125 (QSG84_12120) - 2603491..2604807 (-) 1317 WP_317030629.1 O-antigen ligase family protein -
  QSG84_RS12130 (QSG84_12125) pilA 2604862..2605317 (-) 456 WP_317030630.1 pilin Machinery gene
  QSG84_RS12135 (QSG84_12130) - 2606033..2607664 (+) 1632 WP_317030631.1 O-antigen ligase family protein -
  QSG84_RS12140 (QSG84_12135) bfr 2607768..2608232 (-) 465 WP_317030632.1 bacterioferritin -
  QSG84_RS12145 (QSG84_12140) - 2608513..2608707 (-) 195 WP_317030633.1 bacterioferritin-associated ferredoxin -
  QSG84_RS12150 (QSG84_12145) - 2608876..2609259 (-) 384 WP_317030634.1 RidA family protein -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 15910.32 Da        Isoelectric Point: 9.0316

>NTDB_id=845141 QSG84_RS12130 WP_317030630.1 2604862..2605317(-) (pilA) [Acinetobacter sp. SAAs470]
MNTQKGFTLIELMIVVVIIGILAAIAIPAYQNYIARSQVSEAMTLAAGFKTAIQTNLQNNSCFSNGGNAATDTDIMNGKY
GVGKITQVSGTAAENNLVCGIEYTFRSKGVSNKIASKVISMSVNSNGVLVKDKNTTIKDDLLPQSLLLSGS

Nucleotide


Download         Length: 456 bp        

>NTDB_id=845141 QSG84_RS12130 WP_317030630.1 2604862..2605317(-) (pilA) [Acinetobacter sp. SAAs470]
ATGAATACTCAAAAAGGCTTTACACTTATTGAATTAATGATCGTTGTGGTCATTATTGGAATTTTGGCAGCGATTGCCAT
TCCGGCATATCAAAACTATATTGCTCGTTCACAAGTTTCTGAAGCTATGACTTTAGCAGCAGGCTTTAAAACAGCGATTC
AAACTAACTTACAGAATAATTCTTGTTTTAGTAATGGGGGTAATGCTGCTACAGATACCGATATTATGAATGGTAAATAT
GGTGTTGGTAAAATTACTCAAGTTTCAGGTACTGCGGCAGAGAATAATTTAGTGTGCGGTATCGAATATACCTTTAGAAG
TAAAGGGGTATCAAACAAAATTGCTTCAAAAGTAATTTCTATGTCTGTCAATAGTAATGGCGTATTAGTTAAAGATAAGA
ATACCACCATTAAAGATGATTTACTGCCACAATCCCTCCTACTGTCTGGTTCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter nosocomialis M2

59.06

98.675

0.583
  pilE Neisseria gonorrhoeae MS11

46.825

83.444

0.391
  pilA Acinetobacter baumannii strain A118

38.667

99.338

0.384
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

38.194

95.364

0.364
  pilA Vibrio cholerae strain A1552

38.194

95.364

0.364
  pilA Vibrio cholerae C6706

38.194

95.364

0.364