Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   L6410_RS06535 Genome accession   NZ_AP024276
Coordinates   1299662..1300600 (-) Length   312 a.a.
NCBI ID   WP_237395150.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SUT-286     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1294662..1305600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS06515 (SUT286_12550) - 1295992..1296708 (-) 717 WP_237395146.1 O-methyltransferase -
  L6410_RS06520 (SUT286_12560) - 1296778..1297329 (-) 552 WP_237395147.1 DUF6630 family protein -
  L6410_RS06525 (SUT286_12570) - 1297342..1297785 (-) 444 WP_237395148.1 hypothetical protein -
  L6410_RS06530 (SUT286_12580) pepF 1297787..1299589 (-) 1803 WP_237395149.1 oligoendopeptidase F Regulator
  L6410_RS06535 (SUT286_12590) coiA 1299662..1300600 (-) 939 WP_237395150.1 competence protein CoiA Machinery gene
  L6410_RS06540 (SUT286_12600) metG 1300661..1302664 (-) 2004 WP_237395151.1 methionine--tRNA ligase -
  L6410_RS06545 (SUT286_12610) - 1302821..1303414 (+) 594 WP_237395152.1 DUF1361 domain-containing protein -
  L6410_RS06550 (SUT286_12620) - 1303458..1304207 (-) 750 WP_237395153.1 hypothetical protein -
  L6410_RS06555 (SUT286_12630) - 1304321..1305532 (-) 1212 WP_172075235.1 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 36326.10 Da        Isoelectric Point: 8.4547

>NTDB_id=84485 L6410_RS06535 WP_237395150.1 1299662..1300600(-) (coiA) [Streptococcus parasuis strain SUT-286]
MLVALDEDGQVFNVLENPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCHYFSENESAQHLSLKSCLYRWLVNAER
VELEKCLPSIGQIADLFVNDRLVLEVQCSSLPISRLQLRTQAYREAGYQVLWLLGKDLWLKERLTNLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLDILRLPFAKQILSSMTCPMDEDLPHYIAQQLYFKSPKWL
ALQAEAYGRGENLLTKTALDWFPHIRLPRSAIGFAQIQVNLNSVYQDFDSYYIRVKDKRNQVLYPPVIYLKK

Nucleotide


Download         Length: 939 bp        

>NTDB_id=84485 L6410_RS06535 WP_237395150.1 1299662..1300600(-) (coiA) [Streptococcus parasuis strain SUT-286]
ATGTTAGTTGCACTTGATGAAGATGGACAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGTCGCTATTCTTGTCC
AGGTTGTGGAGGCCTGGTTCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTCACCCTGCGGGACTGCC
ACTATTTTTCCGAGAATGAGTCTGCACAGCATCTGTCCCTCAAGTCTTGTCTGTACAGGTGGTTAGTCAATGCTGAACGA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGTCAGATAGCGGACTTATTTGTCAATGATCGTTTAGTCTTGGAAGTCCA
ATGTTCTAGTCTGCCGATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCGTGAGGCTGGTTATCAGGTTCTTTGGTTGC
TTGGTAAGGATTTGTGGCTCAAGGAACGACTGACTAATTTGCACAAGCAATTTCTCTCTTTTAGTATGAATATGGGGTTT
CACCTCTGGGAATTGGATGACGAGAAAAAAGAATTGCGGCTCCGTTACCTTATTCATGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTAGACATCTTGCGTCTGCCCTTTGCAAAGCAAATTCTAT
CTAGCATGACTTGTCCAATGGATGAAGATTTGCCTCACTACATTGCACAACAGCTTTATTTCAAATCTCCCAAATGGCTC
GCCCTGCAAGCAGAGGCTTATGGACGTGGAGAAAATCTACTGACCAAGACAGCATTAGACTGGTTTCCCCACATCCGACT
GCCCCGCTCTGCCATTGGCTTTGCCCAGATACAAGTAAATTTGAACTCGGTTTACCAGGACTTTGATAGCTATTATATTA
GGGTTAAAGACAAGAGAAATCAAGTCCTTTATCCACCGGTTATTTACCTTAAAAAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.903

99.359

0.526
  coiA Streptococcus pneumoniae TIGR4

50.968

99.359

0.506
  coiA Streptococcus pneumoniae Rx1

50.968

99.359

0.506
  coiA Streptococcus pneumoniae D39

50.968

99.359

0.506
  coiA Streptococcus pneumoniae R6

50.968

99.359

0.506
  coiA Lactococcus lactis subsp. cremoris KW2

42.188

100

0.433

Multiple sequence alignment