Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   L6410_RS06530 Genome accession   NZ_AP024276
Coordinates   1297787..1299589 (-) Length   600 a.a.
NCBI ID   WP_237395149.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SUT-286     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1292787..1304589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS06505 (SUT286_12530) prsA 1293434..1294420 (-) 987 WP_237395144.1 peptidylprolyl isomerase PrsA -
  L6410_RS06510 (SUT286_12540) - 1294538..1295893 (-) 1356 WP_237395145.1 ISLre2 family transposase -
  L6410_RS06515 (SUT286_12550) - 1295992..1296708 (-) 717 WP_237395146.1 O-methyltransferase -
  L6410_RS06520 (SUT286_12560) - 1296778..1297329 (-) 552 WP_237395147.1 DUF6630 family protein -
  L6410_RS06525 (SUT286_12570) - 1297342..1297785 (-) 444 WP_237395148.1 hypothetical protein -
  L6410_RS06530 (SUT286_12580) pepF 1297787..1299589 (-) 1803 WP_237395149.1 oligoendopeptidase F Regulator
  L6410_RS06535 (SUT286_12590) coiA 1299662..1300600 (-) 939 WP_237395150.1 competence protein CoiA Machinery gene
  L6410_RS06540 (SUT286_12600) metG 1300661..1302664 (-) 2004 WP_237395151.1 methionine--tRNA ligase -
  L6410_RS06545 (SUT286_12610) - 1302821..1303414 (+) 594 WP_237395152.1 DUF1361 domain-containing protein -
  L6410_RS06550 (SUT286_12620) - 1303458..1304207 (-) 750 WP_237395153.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69257.48 Da        Isoelectric Point: 4.4898

>NTDB_id=84484 L6410_RS06530 WP_237395149.1 1297787..1299589(-) (pepF) [Streptococcus parasuis strain SUT-286]
MSKQRQEIEEKYQWDLTTIFPTDEAWEEELASLQAETEATKDFAGHLLDSAKSLLDISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYSVFSQAFAFYEPEFMAITEEQLKAFMDEEPTLVQYSHQFEKLLAAKDHVLSQEIEEVLAAT
SEIFESPAETFSVLDNASILFPEIADEEGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDILVEAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEVRLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=84484 L6410_RS06530 WP_237395149.1 1297787..1299589(-) (pepF) [Streptococcus parasuis strain SUT-286]
ATGTCTAAACAACGTCAAGAAATTGAAGAAAAATACCAGTGGGATTTGACCACTATTTTTCCAACCGATGAAGCTTGGGA
AGAAGAATTAGCTTCATTACAAGCAGAAACAGAAGCGACAAAGGATTTTGCTGGCCACTTGCTTGATTCGGCTAAAAGTC
TCTTAGATATTAGTGAAACACAACTCGGTCTCATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACGCGTGAAGGCAAATACCAGGAATTTCAGGCTAAAGCCATGGGCTTGTATTCGGTCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAGGAGCAGTTGAAAGCATTCATGGATGAAGAGCCAACCTTGGTGCAGT
ACAGCCATCAATTTGAAAAACTCTTAGCAGCTAAGGACCACGTTTTGTCACAAGAAATTGAAGAAGTATTGGCAGCTACG
AGTGAGATTTTCGAATCTCCAGCTGAAACCTTCTCTGTTTTGGATAATGCAAGTATCCTATTCCCTGAAATTGCGGATGA
AGAGGGACATTTGGTACCACTTTCTCACGGTAACTATATCCACTTTATGGAGTCTAAAAACCGCGACGTCCGTCAAGAAG
CATATGAGGCCATGTACGGAACCTATGAGCAGTTCCAGCATACCTACGCTAAGACTCTGCAGTCTAATGTTAAGGTCAAT
AACCTGAAAGCACGTTTACGGAAGTACGACTCAGCCCGTCACGCATCACTTGCAGCCAATTTTATTCCAGAATCTGTTTA
CGATATATTAGTGGAGGCAGTCAACAAGCACCTCCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCTTGGGTA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTTAGCACCAAGATTTCCTATGAAGATGCACTCAAG
AAATGCCAAGAAACCTTGGAAATTTTTGGTGAGGATTATTCGGCTATTGTGAAGGAAGCCTTCGAAAATCGTTGGATTGA
CGTCCATGTCAATGAAGGAAAACGCTCAGGAGCATATTCAGGTGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAATTTGGATAATATGTACACCCTTATCCATGAAACAGGGCATTCTCTTCACTCTATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGTCATTATTCACTTTTCTTAGCTGAAATTGCGTCAACAACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTTAACCATTACCTAGATGGTTTCCGTGGCACAGTCT
TCCGTCAGACACAATTTGCCGAGTTTGAACAAGCTATCTATAAGGCAGACCAGGAAGGTCAAGTCTTGACGGCTGATTTC
CTAAATGAATTGTACGGTCAGACAAACGAGAAATACTACGGACTTTCTGCAGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGCATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCGGCAGCATCAGCTCTTGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTAAAGGCTGGTAGCTCAGATTATTCCCTC
AACGTCATTGCAAAAGCAGGTGTAGATATGACCAAGGAAGACTATCTTAATGATGCTTTCAAAGTTTTTGAAGTTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70.167

100

0.702

Multiple sequence alignment