Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VZG88_RS10570 Genome accession   NZ_CP143871
Coordinates   2098161..2098523 (+) Length   120 a.a.
NCBI ID   WP_208675098.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2093161..2103523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG88_RS10545 (VZG88_10545) - 2093180..2093932 (-) 753 WP_208678352.1 cbb3-type cytochrome c oxidase subunit II -
  VZG88_RS10550 (VZG88_10550) - 2093929..2095380 (-) 1452 WP_338437995.1 cbb3-type cytochrome c oxidase subunit I -
  VZG88_RS10555 (VZG88_10555) mreD 2095513..2096196 (-) 684 WP_228383154.1 rod shape-determining protein MreD -
  VZG88_RS10560 (VZG88_10560) mreC 2096157..2096906 (-) 750 WP_208678351.1 rod shape-determining protein MreC -
  VZG88_RS10565 (VZG88_10565) - 2096931..2097932 (-) 1002 WP_275937699.1 rod shape-determining protein -
  VZG88_RS10570 (VZG88_10570) ssb 2098161..2098523 (+) 363 WP_208675098.1 single-stranded DNA-binding protein Machinery gene
  VZG88_RS10575 (VZG88_10575) - 2098650..2099081 (+) 432 WP_208678350.1 GNAT family N-acetyltransferase -
  VZG88_RS10580 (VZG88_10580) comA 2099121..2100560 (-) 1440 WP_208678349.1 phospholipase D-like domain-containing protein Machinery gene
  VZG88_RS10585 (VZG88_10585) - 2100722..2101810 (+) 1089 WP_208678348.1 potassium channel protein -
  VZG88_RS10590 (VZG88_10590) - 2101936..2102583 (+) 648 WP_208678347.1 Coq4 family protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13530.20 Da        Isoelectric Point: 7.9752

>NTDB_id=844595 VZG88_RS10570 WP_208675098.1 2098161..2098523(+) (ssb) [Synechococcus elongatus IITB6]
MSLNVVNLVGRVGRDPEARYFESGSVVCKFSLAVNRRTRNDEPDWFNVEFWGREAQVAIDYVKKGSLIGISGALKIESWT
DRDGKQRTTPVVRGNRLELLGSRRDQEGGMAPRDPDSDLF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=844595 VZG88_RS10570 WP_208675098.1 2098161..2098523(+) (ssb) [Synechococcus elongatus IITB6]
ATGAGCTTAAATGTTGTCAACTTGGTGGGGCGCGTGGGCCGCGACCCTGAGGCTCGCTACTTCGAGTCCGGCTCAGTAGT
CTGTAAGTTTTCGCTGGCGGTCAATCGCCGCACCCGGAATGATGAACCCGACTGGTTCAACGTGGAGTTTTGGGGGCGCG
AGGCACAAGTCGCGATCGACTATGTCAAAAAAGGCAGCCTGATCGGGATCAGTGGCGCCCTCAAAATCGAAAGCTGGACC
GATCGCGATGGCAAGCAGCGAACCACTCCTGTGGTGAGGGGCAATCGTCTCGAACTGCTCGGCTCGCGCCGCGATCAGGA
AGGTGGGATGGCACCTCGAGATCCCGATAGCGATTTGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

37.5

100

0.375