Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VZG88_RS10580 Genome accession   NZ_CP143871
Coordinates   2099121..2100560 (-) Length   479 a.a.
NCBI ID   WP_208678349.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2094121..2105560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG88_RS10555 (VZG88_10555) mreD 2095513..2096196 (-) 684 WP_228383154.1 rod shape-determining protein MreD -
  VZG88_RS10560 (VZG88_10560) mreC 2096157..2096906 (-) 750 WP_208678351.1 rod shape-determining protein MreC -
  VZG88_RS10565 (VZG88_10565) - 2096931..2097932 (-) 1002 WP_275937699.1 rod shape-determining protein -
  VZG88_RS10570 (VZG88_10570) ssb 2098161..2098523 (+) 363 WP_208675098.1 single-stranded DNA-binding protein Machinery gene
  VZG88_RS10575 (VZG88_10575) - 2098650..2099081 (+) 432 WP_208678350.1 GNAT family N-acetyltransferase -
  VZG88_RS10580 (VZG88_10580) comA 2099121..2100560 (-) 1440 WP_208678349.1 phospholipase D-like domain-containing protein Machinery gene
  VZG88_RS10585 (VZG88_10585) - 2100722..2101810 (+) 1089 WP_208678348.1 potassium channel protein -
  VZG88_RS10590 (VZG88_10590) - 2101936..2102583 (+) 648 WP_208678347.1 Coq4 family protein -
  VZG88_RS10595 (VZG88_10595) - 2103033..2103632 (+) 600 WP_208678346.1 class I SAM-dependent methyltransferase -
  VZG88_RS10600 (VZG88_10600) - 2103790..2105016 (-) 1227 WP_208678345.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 52716.16 Da        Isoelectric Point: 5.9112

>NTDB_id=844596 VZG88_RS10580 WP_208678349.1 2099121..2100560(-) (comA) [Synechococcus elongatus IITB6]
MKPGVIAFLLGLLTACQAPLAQILPVAGGGSTRWDVNAPLQVAFNHNPDQRFTDGLGRDREGDDLEGRLLASLEQATTSI
DVAVQEIQLPRLATVLAQKHQAGIPVRVILENQYRQPWSQRLSTPMSDRDRQRLENYRQLADRNGDSQLSPAEIATGDAV
VILERAGVPILDDTADGSKGSGLMHHKFAIIDRQWVVTGSANWTASDFFGDPGRLASRGNANHLLWFRSPAIAATFQTEF
DLMWGDGPGNLPDSLFGRAKPSRSPQSVRVGQTRVLVQFSPSSLRLPWEQSTNGTIARYLTQAQQQVDLALFVFSEQAIA
DVLEARSQQGTQIRLLIDPGFAYRPYSELLDAFGLSLADRDCRVEPNNRPWATPLKTAGVPRLAPGDTLHHKFAVIDRQR
VLTGSHNWSAAANENNDETFLVIEDATLAARFSAEFERLYASAFLGIPPALQRRVNEANRRCGSRLETAPSRDSAEPED

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=844596 VZG88_RS10580 WP_208678349.1 2099121..2100560(-) (comA) [Synechococcus elongatus IITB6]
ATGAAGCCTGGAGTGATCGCTTTTCTACTGGGGCTGCTCACCGCCTGCCAAGCCCCGCTCGCGCAGATTCTCCCCGTTGC
TGGCGGTGGCTCGACTCGTTGGGATGTCAATGCACCCCTCCAAGTTGCGTTTAATCACAATCCAGATCAGCGATTTACTG
ATGGCTTAGGGCGCGATCGCGAGGGAGATGATCTGGAAGGGCGACTCCTTGCCAGCTTGGAACAGGCGACAACCTCAATT
GATGTCGCGGTTCAGGAAATCCAGCTTCCCCGACTGGCAACAGTCTTGGCCCAAAAACACCAGGCGGGCATCCCTGTTCG
CGTCATCTTGGAAAACCAATATCGCCAGCCCTGGAGTCAGCGCCTCTCTACCCCAATGAGCGATCGCGATCGTCAACGGC
TGGAGAACTACCGGCAACTGGCCGATCGCAATGGAGATAGCCAGCTCAGCCCAGCTGAAATTGCCACGGGAGATGCTGTC
GTCATCCTTGAGCGTGCTGGGGTGCCGATCCTGGATGACACCGCCGATGGCAGCAAAGGCAGCGGCCTCATGCACCACAA
GTTTGCGATCATCGATCGCCAATGGGTCGTCACCGGTTCAGCCAACTGGACAGCCAGTGATTTCTTTGGCGATCCGGGGC
GACTGGCCAGCCGAGGCAATGCTAATCATCTGCTCTGGTTCCGCAGCCCTGCGATCGCCGCTACCTTCCAAACAGAATTT
GACCTCATGTGGGGAGATGGCCCCGGTAACTTGCCCGACAGCCTGTTTGGTCGGGCGAAGCCGTCGCGATCGCCGCAATC
AGTGCGTGTGGGGCAAACCCGTGTCCTGGTGCAGTTTTCGCCCTCCAGTCTGCGATTGCCTTGGGAGCAGAGCACCAATG
GCACGATCGCTCGTTACCTCACGCAAGCTCAACAGCAGGTTGATCTGGCGCTCTTTGTTTTTTCCGAGCAGGCGATCGCG
GATGTTTTGGAAGCGCGATCGCAGCAAGGCACCCAGATTCGCTTGCTGATTGACCCTGGTTTTGCCTATCGGCCCTACAG
CGAACTCTTGGATGCGTTTGGTCTCAGTCTTGCCGATCGCGACTGTCGTGTTGAGCCTAACAATCGCCCCTGGGCAACGC
CACTGAAGACTGCCGGAGTGCCGCGTTTGGCTCCAGGCGATACGTTGCATCACAAGTTCGCCGTGATCGATCGCCAGCGT
GTGCTGACCGGATCCCACAACTGGAGTGCAGCGGCCAACGAAAACAACGATGAAACCTTTCTGGTTATTGAGGATGCAAC
CTTGGCAGCTCGATTCAGTGCTGAATTTGAGCGACTCTATGCCAGTGCGTTCTTAGGAATCCCGCCAGCTCTACAACGGC
GAGTCAACGAGGCCAATCGCCGCTGCGGGAGTCGACTGGAAACAGCACCCAGCCGAGATTCTGCAGAGCCAGAAGACTAA

Domains

Predicted by InterProScan.

PLD-like domain (PLDc_2)

(298-439)

PLD-like domain (PLDc_2)

(70-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

45.798

99.374

0.455