Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   QRS93_RS00675 Genome accession   NZ_CP127842
Coordinates   115754..116080 (+) Length   108 a.a.
NCBI ID   WP_003055259.1    Uniprot ID   A0A9X8T184
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 110754..121080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRS93_RS00660 (QRS93_00660) - 113398..113763 (+) 366 WP_003055257.1 DUF1033 family protein -
  QRS93_RS00665 (QRS93_00665) comGA/cglA 113844..114785 (+) 942 WP_015016543.1 competence type IV pilus ATPase ComGA Machinery gene
  QRS93_RS00670 (QRS93_00670) comYB 114721..115752 (+) 1032 WP_042357807.1 competence type IV pilus assembly protein ComGB Machinery gene
  QRS93_RS00675 (QRS93_00675) comYC 115754..116080 (+) 327 WP_003055259.1 competence type IV pilus major pilin ComGC Machinery gene
  QRS93_RS00680 (QRS93_00680) comGD 116055..116483 (+) 429 WP_041788719.1 competence type IV pilus minor pilin ComGD -
  QRS93_RS00685 (QRS93_00685) comGE 116491..116736 (+) 246 WP_003058569.1 competence type IV pilus minor pilin ComGE -
  QRS93_RS00690 (QRS93_00690) comGF 116717..117157 (+) 441 WP_003061780.1 competence type IV pilus minor pilin ComGF -
  QRS93_RS00695 (QRS93_00695) comGG 117186..117509 (+) 324 WP_227985720.1 competence type IV pilus minor pilin ComGG -
  QRS93_RS00700 (QRS93_00700) comYH 117572..118525 (+) 954 WP_003060701.1 class I SAM-dependent methyltransferase Machinery gene
  QRS93_RS00705 (QRS93_00705) - 118584..119780 (+) 1197 WP_003058485.1 acetate kinase -
  QRS93_RS00710 (QRS93_00710) - 120086..120292 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  QRS93_RS00715 (QRS93_00715) - 120395..121075 (+) 681 WP_003060329.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12384.38 Da        Isoelectric Point: 9.6412

>NTDB_id=844596 QRS93_RS00675 WP_003055259.1 115754..116080(+) (comYC) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37]
MKNQWKPLRQYQLQAFTLLEMLLVILVISVLMLLFVPNLSKQKDRVTETGNAAVVKLVENQAELYELSQGSKPSLSQLKT
DGSITDKQVKAYTDYYGKHRDETQKLQP

Nucleotide


Download         Length: 327 bp        

>NTDB_id=844596 QRS93_RS00675 WP_003055259.1 115754..116080(+) (comYC) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37]
ATGAAAAACCAATGGAAACCATTACGGCAATACCAACTACAAGCTTTCACACTTCTAGAAATGTTACTGGTAATTTTAGT
CATCAGTGTCTTAATGCTCTTATTTGTACCTAATTTAAGCAAACAAAAAGATAGGGTTACCGAAACAGGAAATGCTGCTG
TTGTCAAATTAGTGGAGAATCAAGCAGAGTTGTACGAATTATCGCAAGGATCAAAACCAAGTTTAAGTCAATTAAAGACT
GATGGCAGTATTACAGATAAGCAGGTAAAAGCTTACACAGACTATTATGGAAAACACAGAGATGAGACTCAAAAACTGCA
ACCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

60.194

95.37

0.574
  comGC/cglC Streptococcus mitis SK321

53.774

98.148

0.528
  comGC Lactococcus lactis subsp. cremoris KW2

54.369

95.37

0.519
  comGC/cglC Streptococcus mitis NCTC 12261

55.556

91.667

0.509
  comGC/cglC Streptococcus pneumoniae Rx1

51.887

98.148

0.509
  comGC/cglC Streptococcus pneumoniae D39

51.887

98.148

0.509
  comGC/cglC Streptococcus pneumoniae R6

51.887

98.148

0.509
  comGC/cglC Streptococcus pneumoniae TIGR4

51.402

99.074

0.509
  comYC Streptococcus mutans UA140

53.465

93.519

0.5
  comYC Streptococcus mutans UA159

53.465

93.519

0.5
  comYC Streptococcus suis isolate S10

50.562

82.407

0.417