Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | VZG88_RS10970 | Genome accession | NZ_CP143871 |
| Coordinates | 2179885..2182359 (-) | Length | 824 a.a. |
| NCBI ID | WP_208674642.1 | Uniprot ID | - |
| Organism | Synechococcus elongatus IITB6 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2174885..2187359
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VZG88_RS10945 (VZG88_10945) | - | 2175406..2176695 (-) | 1290 | WP_208678302.1 | ATP-binding protein | - |
| VZG88_RS10950 (VZG88_10950) | - | 2176815..2178011 (+) | 1197 | WP_208679044.1 | M20 family metallopeptidase | - |
| VZG88_RS10955 (VZG88_10955) | - | 2178008..2178757 (-) | 750 | WP_208678301.1 | TIGR00297 family protein | - |
| VZG88_RS10960 (VZG88_10960) | - | 2178809..2179246 (+) | 438 | WP_208678300.1 | VOC family protein | - |
| VZG88_RS10965 (VZG88_10965) | - | 2179386..2179727 (+) | 342 | WP_208678299.1 | hypothetical protein | - |
| VZG88_RS10970 (VZG88_10970) | clpC | 2179885..2182359 (-) | 2475 | WP_208674642.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| VZG88_RS10975 (VZG88_10975) | rimI | 2182503..2183102 (-) | 600 | WP_208678298.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| VZG88_RS10980 (VZG88_10980) | lysA | 2183150..2184544 (+) | 1395 | WP_208678297.1 | diaminopimelate decarboxylase | - |
| VZG88_RS10985 (VZG88_10985) | cdaA | 2184624..2185544 (+) | 921 | WP_208678296.1 | diadenylate cyclase CdaA | - |
| VZG88_RS10990 (VZG88_10990) | - | 2185541..2186296 (+) | 756 | WP_208674648.1 | isoprenyl transferase | - |
| VZG88_RS10995 (VZG88_10995) | - | 2186309..2186584 (-) | 276 | WP_208678295.1 | DUF3143 domain-containing protein | - |
| VZG88_RS11000 (VZG88_11000) | - | 2186562..2187131 (-) | 570 | WP_208676791.1 | J domain-containing protein | - |
Sequence
Protein
Download Length: 824 a.a. Molecular weight: 91287.38 Da Isoelectric Point: 5.3220
>NTDB_id=844597 VZG88_RS10970 WP_208674642.1 2179885..2182359(-) (clpC) [Synechococcus elongatus IITB6]
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKIIGRGSGFVAVEIPF
TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVSSGGSQGRTKTP
TLDEFGSNLTQQAADGKLDPVVGRQKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIATGDIPDILEDKRVVT
LDIGLLVAGTKYRGEFEERLKKIMDEIRSAGNVILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYR
KHIERDAALERRFQPVMVGEPSVDDTIEILRGLRERYEQHHKLKIADEALEAAAKLADRYISDRFLPDKAIDLIDEAGSR
VRLMNSQLPPAAKELDKELRQVLKDKDDAVRSQDFDKAGELRDREMEIKTQIRSIAQSKKADGTSSSDDSPIVTEEDIAH
IVASWTGVPVNKLTESESTKLLNMEETLHSRLIGQDEAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKAL
AAYFFGSEEAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVVLLDEIEKAHPDVFNLLLQLLEDGR
LTDAKGRTVDFKNTLIILTSNIGSKVIEKGGGGLGFDFSGEDEAENQYNRIRSLVNEELKQYFRPEFLNRLDEIIVFRQL
NKAEVKEIADIMLREVFGRMQEKGITLSVTEKFKDRLVEEGYNPSYGARPLRRAIMRLLEDSLAEEFLSGKLREGDTAIV
DIGEEGKVQVIAQEKRELLPQAVE
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKIIGRGSGFVAVEIPF
TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVSSGGSQGRTKTP
TLDEFGSNLTQQAADGKLDPVVGRQKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIATGDIPDILEDKRVVT
LDIGLLVAGTKYRGEFEERLKKIMDEIRSAGNVILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYR
KHIERDAALERRFQPVMVGEPSVDDTIEILRGLRERYEQHHKLKIADEALEAAAKLADRYISDRFLPDKAIDLIDEAGSR
VRLMNSQLPPAAKELDKELRQVLKDKDDAVRSQDFDKAGELRDREMEIKTQIRSIAQSKKADGTSSSDDSPIVTEEDIAH
IVASWTGVPVNKLTESESTKLLNMEETLHSRLIGQDEAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKAL
AAYFFGSEEAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVVLLDEIEKAHPDVFNLLLQLLEDGR
LTDAKGRTVDFKNTLIILTSNIGSKVIEKGGGGLGFDFSGEDEAENQYNRIRSLVNEELKQYFRPEFLNRLDEIIVFRQL
NKAEVKEIADIMLREVFGRMQEKGITLSVTEKFKDRLVEEGYNPSYGARPLRRAIMRLLEDSLAEEFLSGKLREGDTAIV
DIGEEGKVQVIAQEKRELLPQAVE
Nucleotide
Download Length: 2475 bp
>NTDB_id=844597 VZG88_RS10970 WP_208674642.1 2179885..2182359(-) (clpC) [Synechococcus elongatus IITB6]
ATGTTTGAACGCTTTACCGAAAAAGCCATTAAGGTCATCATGCTGGCTCAGGAGGAAGCGCGTCGCCTGGGTCACAACTT
CGTCGGCACCGAGCAGATTTTGCTAGGCCTCATCGGTGAAGGCACCGGCGTTGCCGCCAAAGTTCTGAAATCGATGGGTG
TCAACCTCAAGGATGCTCGCATCGAAGTCGAAAAAATTATTGGCCGTGGCTCGGGTTTCGTAGCGGTGGAGATCCCGTTT
ACACCGCGTGCCAAGCGTGTCCTTGAGCTGTCGCTCGAAGAGGCTCGGCAACTTGGGCATAACTACATTGGCACCGAGCA
CCTTCTGCTGGGCTTGATCCGTGAAGGCGAGGGTGTTGCCGCTCGCGTCCTCGAGAATTTGGGCGTCGATCTCTCGAAAG
TGCGGACACAGGTAATCCGCATGCTAGGTGAGACCGCAGAGGTTTCCAGTGGTGGTAGCCAAGGCCGGACGAAAACCCCA
ACCTTGGATGAATTCGGCTCGAACCTGACGCAGCAGGCTGCAGATGGGAAGCTCGATCCGGTGGTGGGTCGTCAGAAAGA
AATCGAGCGGGTGATTCAGATTCTGGGTCGCCGCACCAAGAACAACCCTGTGTTGATTGGCGAACCCGGCGTCGGTAAAA
CTGCGATCGCCGAAGGACTAGCGCAGCGGATTGCCACTGGCGATATTCCCGACATTCTGGAAGACAAGCGCGTTGTCACC
CTCGATATCGGTCTGCTGGTTGCGGGCACCAAGTATCGGGGTGAGTTTGAAGAACGCCTCAAGAAAATCATGGACGAGAT
CCGCTCGGCGGGGAACGTCATCCTGGTGATTGACGAGGTTCACACCCTGATTGGGGCCGGTGCCGCTGAAGGCGCAATCG
ATGCTGCCAACATCCTCAAGCCAGCTTTGGCACGGGGCGAGCTGCAGTGCATCGGTGCCACCACGCTGGATGAGTACCGT
AAGCACATCGAGCGCGATGCTGCATTGGAGCGCCGTTTCCAACCAGTCATGGTGGGCGAGCCCAGCGTCGATGACACGAT
CGAGATTCTGCGGGGTCTGCGCGAACGCTACGAGCAGCACCACAAGCTGAAAATTGCAGACGAAGCGCTAGAGGCTGCAG
CCAAGCTAGCCGATCGCTACATCAGCGATCGCTTCCTGCCCGATAAGGCAATCGACTTGATCGATGAGGCCGGTTCACGG
GTTCGCCTGATGAACTCGCAATTGCCCCCTGCTGCGAAGGAACTGGACAAGGAACTGCGTCAAGTCCTCAAGGACAAAGA
CGACGCCGTCCGCTCCCAAGACTTTGACAAAGCGGGTGAACTGCGCGATCGCGAGATGGAGATCAAAACCCAGATCCGCT
CGATCGCCCAAAGCAAGAAAGCCGATGGCACCAGCAGCAGTGATGATTCGCCGATCGTAACTGAGGAAGATATCGCGCAT
ATCGTCGCCTCTTGGACCGGCGTACCAGTCAACAAGCTGACCGAGTCGGAATCAACCAAATTGCTGAACATGGAGGAGAC
CCTCCACAGCCGCTTGATTGGTCAAGACGAAGCCGTGAAAGCTGTTTCACGAGCAATCCGTCGCGCCCGAGTTGGTCTCA
AGAACCCCAACCGTCCGATCGCCAGCTTCATCTTCAGCGGCCCGACCGGTGTTGGTAAAACCGAGCTGACTAAAGCTTTG
GCGGCTTACTTCTTCGGCAGCGAAGAGGCGATGATCCGCCTTGACATGTCGGAGTACATGGAGCGCCATACCGTCAGCAA
GCTGATCGGTTCGCCTCCGGGCTATGTCGGCTATAACGAAGGCGGCCAGCTGACTGAAGCGGTTCGTCGTCGTCCCTACA
CCGTGGTGCTGCTCGACGAAATCGAGAAAGCTCACCCCGATGTCTTCAACCTGCTCTTGCAGTTACTGGAAGACGGTCGC
TTGACTGATGCCAAAGGTCGGACGGTGGACTTCAAGAACACCCTGATCATCCTGACCTCCAACATTGGCTCGAAGGTGAT
CGAGAAGGGTGGCGGCGGTCTAGGCTTTGACTTCTCGGGTGAGGATGAAGCTGAGAACCAATACAACCGCATTCGCTCCT
TGGTGAACGAAGAGCTGAAGCAATACTTCCGCCCTGAGTTCCTCAACCGCTTGGACGAAATCATCGTCTTCCGTCAGCTC
AACAAAGCGGAAGTCAAAGAAATTGCCGACATTATGTTGCGCGAGGTCTTTGGCCGGATGCAGGAAAAAGGCATCACCCT
GTCGGTCACTGAGAAGTTCAAAGACCGCTTGGTGGAAGAGGGCTACAACCCCAGCTACGGGGCACGTCCGCTCCGTCGGG
CGATCATGCGCTTGCTCGAGGATTCCTTGGCTGAGGAGTTCCTGTCCGGCAAGCTCCGCGAAGGCGACACCGCCATCGTT
GATATTGGTGAAGAAGGCAAAGTGCAAGTAATTGCACAAGAGAAACGCGAACTCCTGCCCCAAGCAGTTGAGTAA
ATGTTTGAACGCTTTACCGAAAAAGCCATTAAGGTCATCATGCTGGCTCAGGAGGAAGCGCGTCGCCTGGGTCACAACTT
CGTCGGCACCGAGCAGATTTTGCTAGGCCTCATCGGTGAAGGCACCGGCGTTGCCGCCAAAGTTCTGAAATCGATGGGTG
TCAACCTCAAGGATGCTCGCATCGAAGTCGAAAAAATTATTGGCCGTGGCTCGGGTTTCGTAGCGGTGGAGATCCCGTTT
ACACCGCGTGCCAAGCGTGTCCTTGAGCTGTCGCTCGAAGAGGCTCGGCAACTTGGGCATAACTACATTGGCACCGAGCA
CCTTCTGCTGGGCTTGATCCGTGAAGGCGAGGGTGTTGCCGCTCGCGTCCTCGAGAATTTGGGCGTCGATCTCTCGAAAG
TGCGGACACAGGTAATCCGCATGCTAGGTGAGACCGCAGAGGTTTCCAGTGGTGGTAGCCAAGGCCGGACGAAAACCCCA
ACCTTGGATGAATTCGGCTCGAACCTGACGCAGCAGGCTGCAGATGGGAAGCTCGATCCGGTGGTGGGTCGTCAGAAAGA
AATCGAGCGGGTGATTCAGATTCTGGGTCGCCGCACCAAGAACAACCCTGTGTTGATTGGCGAACCCGGCGTCGGTAAAA
CTGCGATCGCCGAAGGACTAGCGCAGCGGATTGCCACTGGCGATATTCCCGACATTCTGGAAGACAAGCGCGTTGTCACC
CTCGATATCGGTCTGCTGGTTGCGGGCACCAAGTATCGGGGTGAGTTTGAAGAACGCCTCAAGAAAATCATGGACGAGAT
CCGCTCGGCGGGGAACGTCATCCTGGTGATTGACGAGGTTCACACCCTGATTGGGGCCGGTGCCGCTGAAGGCGCAATCG
ATGCTGCCAACATCCTCAAGCCAGCTTTGGCACGGGGCGAGCTGCAGTGCATCGGTGCCACCACGCTGGATGAGTACCGT
AAGCACATCGAGCGCGATGCTGCATTGGAGCGCCGTTTCCAACCAGTCATGGTGGGCGAGCCCAGCGTCGATGACACGAT
CGAGATTCTGCGGGGTCTGCGCGAACGCTACGAGCAGCACCACAAGCTGAAAATTGCAGACGAAGCGCTAGAGGCTGCAG
CCAAGCTAGCCGATCGCTACATCAGCGATCGCTTCCTGCCCGATAAGGCAATCGACTTGATCGATGAGGCCGGTTCACGG
GTTCGCCTGATGAACTCGCAATTGCCCCCTGCTGCGAAGGAACTGGACAAGGAACTGCGTCAAGTCCTCAAGGACAAAGA
CGACGCCGTCCGCTCCCAAGACTTTGACAAAGCGGGTGAACTGCGCGATCGCGAGATGGAGATCAAAACCCAGATCCGCT
CGATCGCCCAAAGCAAGAAAGCCGATGGCACCAGCAGCAGTGATGATTCGCCGATCGTAACTGAGGAAGATATCGCGCAT
ATCGTCGCCTCTTGGACCGGCGTACCAGTCAACAAGCTGACCGAGTCGGAATCAACCAAATTGCTGAACATGGAGGAGAC
CCTCCACAGCCGCTTGATTGGTCAAGACGAAGCCGTGAAAGCTGTTTCACGAGCAATCCGTCGCGCCCGAGTTGGTCTCA
AGAACCCCAACCGTCCGATCGCCAGCTTCATCTTCAGCGGCCCGACCGGTGTTGGTAAAACCGAGCTGACTAAAGCTTTG
GCGGCTTACTTCTTCGGCAGCGAAGAGGCGATGATCCGCCTTGACATGTCGGAGTACATGGAGCGCCATACCGTCAGCAA
GCTGATCGGTTCGCCTCCGGGCTATGTCGGCTATAACGAAGGCGGCCAGCTGACTGAAGCGGTTCGTCGTCGTCCCTACA
CCGTGGTGCTGCTCGACGAAATCGAGAAAGCTCACCCCGATGTCTTCAACCTGCTCTTGCAGTTACTGGAAGACGGTCGC
TTGACTGATGCCAAAGGTCGGACGGTGGACTTCAAGAACACCCTGATCATCCTGACCTCCAACATTGGCTCGAAGGTGAT
CGAGAAGGGTGGCGGCGGTCTAGGCTTTGACTTCTCGGGTGAGGATGAAGCTGAGAACCAATACAACCGCATTCGCTCCT
TGGTGAACGAAGAGCTGAAGCAATACTTCCGCCCTGAGTTCCTCAACCGCTTGGACGAAATCATCGTCTTCCGTCAGCTC
AACAAAGCGGAAGTCAAAGAAATTGCCGACATTATGTTGCGCGAGGTCTTTGGCCGGATGCAGGAAAAAGGCATCACCCT
GTCGGTCACTGAGAAGTTCAAAGACCGCTTGGTGGAAGAGGGCTACAACCCCAGCTACGGGGCACGTCCGCTCCGTCGGG
CGATCATGCGCTTGCTCGAGGATTCCTTGGCTGAGGAGTTCCTGTCCGGCAAGCTCCGCGAAGGCGACACCGCCATCGTT
GATATTGGTGAAGAAGGCAAAGTGCAAGTAATTGCACAAGAGAAACGCGAACTCCTGCCCCAAGCAGTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
62.069 |
98.544 |
0.612 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
44.27 |
100 |
0.445 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
55.226 |
77.791 |
0.43 |
| clpE | Streptococcus mutans UA159 |
53.092 |
80.461 |
0.427 |
| clpC | Streptococcus mutans UA159 |
42.036 |
100 |
0.426 |
| clpC | Streptococcus pneumoniae D39 |
45.407 |
92.476 |
0.42 |
| clpC | Streptococcus pneumoniae Rx1 |
45.407 |
92.476 |
0.42 |
| clpE | Streptococcus pneumoniae Rx1 |
51.187 |
81.796 |
0.419 |
| clpE | Streptococcus pneumoniae R6 |
51.187 |
81.796 |
0.419 |
| clpE | Streptococcus pneumoniae D39 |
51.187 |
81.796 |
0.419 |
| clpE | Streptococcus pneumoniae TIGR4 |
51.039 |
81.796 |
0.417 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.37 |
91.748 |
0.416 |
| clpC | Streptococcus thermophilus LMD-9 |
41.255 |
100 |
0.415 |
| clpC | Streptococcus thermophilus LMG 18311 |
41.134 |
100 |
0.414 |