Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   L6410_RS00425 Genome accession   NZ_AP024276
Coordinates   73557..74459 (+) Length   300 a.a.
NCBI ID   WP_172075747.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SUT-286     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 68557..79459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS00395 (SUT286_00620) - 68845..69591 (-) 747 WP_237395561.1 amino acid ABC transporter ATP-binding protein -
  L6410_RS00400 (SUT286_00630) - 69596..70273 (-) 678 WP_024392848.1 amino acid ABC transporter permease -
  L6410_RS00405 (SUT286_00640) - 70254..70913 (-) 660 WP_237396593.1 amino acid ABC transporter permease -
  L6410_RS00410 (SUT286_00650) ruvB 71041..72039 (+) 999 WP_237395563.1 Holliday junction branch migration DNA helicase RuvB -
  L6410_RS00415 (SUT286_00660) - 72039..72785 (+) 747 WP_237395564.1 GNAT family N-acetyltransferase -
  L6410_RS00420 (SUT286_00670) - 72787..73401 (+) 615 WP_237395566.1 HAD-IA family hydrolase -
  L6410_RS00425 (SUT286_00680) comR 73557..74459 (+) 903 WP_172075747.1 transcriptional regulator Regulator
  L6410_RS00430 (SUT286_00690) - 74667..75887 (+) 1221 WP_237395568.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  L6410_RS00435 (SUT286_00700) - 76069..77589 (+) 1521 WP_237395570.1 quinol oxidase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 35887.08 Da        Isoelectric Point: 4.3992

>NTDB_id=84454 L6410_RS00425 WP_172075747.1 73557..74459(+) (comR) [Streptococcus parasuis strain SUT-286]
MNDKEFGQRVRYLREKLAITREEFCEDELELSVRQLSRIEAGQCKPTFSKIGFIASRLNMGLYELMPDYVQLPERYSRLK
YEVLRTPTYGDQFLVEQRNQMLTIIYDEYYDELPEEEQIAIDAFQSKIDAFQTKSTQYGKSILDDYFEQVIRKTIFDVND
LLIIHLYLIHLDSEPENIIENQYFLEMVNRLHDQMEIMNLNELFVLRDVMMTSVGILGKIEAYDLMPSLFNALDKIMVLT
QDFQKKPILNLLKWKYELYVNKDQVAAYQYYEDAVKFAQLIGNDYLVRRIKEDWEEEDHL

Nucleotide


Download         Length: 903 bp        

>NTDB_id=84454 L6410_RS00425 WP_172075747.1 73557..74459(+) (comR) [Streptococcus parasuis strain SUT-286]
GTGAACGATAAGGAATTTGGGCAACGTGTGAGATATTTACGGGAGAAATTAGCCATTACGCGTGAAGAATTCTGTGAAGA
TGAACTAGAATTATCTGTTCGTCAATTGAGTCGTATAGAAGCGGGACAATGCAAACCAACTTTTTCAAAGATAGGTTTTA
TAGCGAGCAGGTTGAATATGGGTTTATATGAGCTTATGCCGGATTATGTCCAACTTCCGGAACGCTATTCGCGTCTAAAA
TATGAGGTATTACGAACTCCTACCTATGGAGACCAATTTTTGGTAGAGCAACGCAATCAAATGCTGACAATCATTTATGA
TGAATATTACGATGAGCTCCCAGAAGAAGAACAAATAGCTATTGATGCTTTTCAGTCTAAGATAGATGCTTTTCAAACAA
AGTCTACTCAATATGGAAAGTCAATATTAGATGATTATTTTGAACAGGTTATTCGTAAAACTATATTTGATGTCAATGAC
TTATTGATTATCCATTTATACTTAATTCATCTTGATAGTGAACCAGAAAATATTATTGAAAATCAATATTTTTTGGAAAT
GGTAAATCGACTCCATGATCAAATGGAGATTATGAATTTGAATGAATTATTCGTTTTAAGGGATGTGATGATGACGTCTG
TTGGTATTTTGGGGAAAATAGAAGCTTACGACTTAATGCCTTCGCTTTTTAATGCCCTAGATAAAATAATGGTTTTAACT
CAAGATTTTCAAAAGAAACCCATTTTAAATTTATTGAAATGGAAATATGAGTTATATGTTAACAAGGATCAAGTGGCAGC
ATACCAATATTATGAAGATGCTGTGAAGTTTGCTCAACTTATTGGAAATGATTATTTGGTTAGGAGAATAAAGGAGGATT
GGGAAGAGGAGGACCACCTATAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(73-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

59.459

98.667

0.587
  comR Streptococcus suis 05ZYH33

59.459

98.667

0.587
  comR Streptococcus suis D9

51.839

99.667

0.517
  comR Streptococcus mutans UA159

40.803

99.667

0.407
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

40.418

95.667

0.387
  comR Streptococcus pyogenes MGAS8232

38.255

99.333

0.38
  comR Streptococcus pyogenes MGAS315

36.7

99

0.363

Multiple sequence alignment