Detailed information NTG0844372

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: VZF83_RS04445
• Genome accession: NZ_CP143849
• Coordinates: 918251..918931 (+)
• Length: 226 a.a.
• NCBI ID: WP_261790082.1
• Uniprot ID: -
• Organism: Synechococcus elongatus IITB3
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 913251..923931

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VZF83_RS04420 (VZF83_04420)	psbA	913555..914637 (-)	1083	WP_338431276.1	photosystem II q(b) protein	-
VZF83_RS04425 (VZF83_04425)	-	914739..915083 (-)	345	WP_208676689.1	histidine triad nucleotide-binding protein	-
VZF83_RS04430 (VZF83_04430)	-	915171..916709 (+)	1539	WP_208676691.1	YifB family Mg chelatase-like AAA ATPase	-
VZF83_RS04435 (VZF83_04435)	-	916747..917316 (-)	570	WP_338431278.1	hypothetical protein	-
VZF83_RS04440 (VZF83_04440)	psb29	917437..918285 (-)	849	WP_261790063.1	photosystem II biogenesis protein Psp29	-
VZF83_RS04445 (VZF83_04445)	clpP	918251..918931 (+)	681	WP_261790082.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
VZF83_RS04450 (VZF83_04450)	-	918941..919834 (-)	894	WP_338431280.1	PHP domain-containing protein	-
VZF83_RS04455 (VZF83_04455)	ilvC	919833..920825 (+)	993	WP_208676699.1	ketol-acid reductoisomerase	-
VZF83_RS04460 (VZF83_04460)	-	921301..922416 (+)	1116	WP_338431282.1	hypothetical protein	-
VZF83_RS04465 (VZF83_04465)	-	922456..923361 (+)	906	WP_338431284.1	S-4TM family putative pore-forming effector	-

Sequence

Protein

• Length: 226 a.a.
• Molecular weight: 24895.21 Da
• Isoelectric Point: 4.7477

>NTDB_id=844372 VZF83_RS04445 WP_261790082.1 918251..918931(+) (clpP) [Synechococcus elongatus IITB3]
MASFAKQRPKGTSGYNNEVFTDRAATENLMIPIVVEESGRGERAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEA
EDPEKDIYLYINSPGGSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQGQA
KDIEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSANEAVEYGLIDRVIDRRALNTAA

Nucleotide

• Length: 681 bp

>NTDB_id=844372 VZF83_RS04445 WP_261790082.1 918251..918931(+) (clpP) [Synechococcus elongatus IITB3]
ATCGCCAGCTTTGCCAAGCAACGACCGAAGGGCACCTCTGGCTACAATAACGAAGTCTTCACCGACCGTGCAGCAACCGA
GAACCTCATGATCCCCATCGTCGTCGAAGAATCTGGACGGGGCGAACGCGCCTTTGATATCTACTCGCGTCTGTTGCGGG
AGCGGATTATCTTCTTGGGCGAACCTGTCACCTCTGATGTCGCCAACCGCATCGTGGCGCAGTTGCTGTTCCTCGAAGCC
GAAGATCCCGAGAAAGATATTTACCTCTACATCAATTCACCGGGCGGCTCGGTCTACGACGGCCTGGGCATTTTCGACAC
GATGAACCACATCCGTCCTGACGTTTCGACAGTTTGTGTCGGTCTGGCGGCCAGCATGGGCGCTTTCTTGCTGGCAGCAG
GTGCCAAAGGCAAGCGGACGAGCTTGGCTCACTCGCGGATCATGATTCACCAACCCTTGGGGGGTGCTCAGGGTCAGGCC
AAGGATATTGAGATCCAAGCCAACGAAATCCTCTACATTAAGCAGAACTTGAATGAGGTGTTGGCGGAGCGCACCGGTCA
GCCTCTCAGCCGCATTGAGGATGACACCGATCGCGACTTCTTCATGTCCGCCAATGAAGCGGTGGAATACGGTCTGATCG
ATCGCGTCATCGATCGCCGTGCCCTCAACACCGCCGCTTAG

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (40-219)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.021	83.186	0.558
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.921	84.513	0.549
clpP	Streptococcus pneumoniae Rx1	50.51	86.726	0.438
clpP	Streptococcus pneumoniae D39	50.51	86.726	0.438
clpP	Streptococcus pneumoniae R6	50.51	86.726	0.438
clpP	Streptococcus pneumoniae TIGR4	50.51	86.726	0.438
clpP	Lactococcus lactis subsp. cremoris KW2	50.769	86.283	0.438
clpP	Streptococcus thermophilus LMG 18311	50.256	86.283	0.434
clpP	Streptococcus thermophilus LMD-9	50.256	86.283	0.434
clpP	Streptococcus mutans UA159	49.231	86.283	0.425
clpP	Streptococcus pyogenes JRS4	48.718	86.283	0.42
clpP	Streptococcus pyogenes MGAS315	48.718	86.283	0.42
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	48.718	86.283	0.42