Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QRO24_RS07700 Genome accession   NZ_CP127829
Coordinates   1602239..1602700 (-) Length   153 a.a.
NCBI ID   WP_335793446.1    Uniprot ID   -
Organism   Gallibacterium anatis strain OH/Ck/12965/20     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1597239..1607700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRO24_RS07670 (QRO24_07625) - 1597747..1598019 (-) 273 WP_039133889.1 GNAT family N-acetyltransferase -
  QRO24_RS07675 (QRO24_07630) yacG 1598105..1598323 (-) 219 WP_018345915.1 DNA gyrase inhibitor YacG -
  QRO24_RS07680 (QRO24_07635) coaE 1598313..1598945 (-) 633 WP_409025545.1 dephospho-CoA kinase -
  QRO24_RS07685 (QRO24_07640) - 1598960..1599592 (-) 633 WP_409025546.1 prepilin peptidase -
  QRO24_RS07690 (QRO24_07645) - 1599589..1600797 (-) 1209 WP_335793447.1 type II secretion system F family protein -
  QRO24_RS07695 (QRO24_07650) pilB 1600813..1602222 (-) 1410 WP_018345911.1 GspE/PulE family protein Machinery gene
  QRO24_RS07700 (QRO24_07655) pilA 1602239..1602700 (-) 462 WP_335793446.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QRO24_RS07705 (QRO24_07660) ampD 1602805..1603359 (+) 555 WP_264779690.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QRO24_RS07710 (QRO24_07665) - 1603446..1603781 (+) 336 WP_013746603.1 hypothetical protein -
  QRO24_RS07715 (QRO24_07670) - 1603890..1605284 (+) 1395 WP_335793445.1 chloride channel protein -
  QRO24_RS07720 (QRO24_07675) dusA 1605265..1606245 (+) 981 WP_039092431.1 tRNA dihydrouridine(20/20a) synthase DusA -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16417.83 Da        Isoelectric Point: 8.0868

>NTDB_id=844373 QRO24_RS07700 WP_335793446.1 1602239..1602700(-) (pilA) [Gallibacterium anatis strain OH/Ck/12965/20]
MKKREQLKANYAGFTLIELMIVIAIIAVLATIAIPSYQNYTKKAAISELIQASSPYKAEVELCIYNTKSKASCNAGQNGI
QAKPSNMDKFKYLKEVNVAAGVISVFGKPSLESISYTMTPSDGNNGELIDWSVTCSGDNGLFPAGFCSNTSAN

Nucleotide


Download         Length: 462 bp        

>NTDB_id=844373 QRO24_RS07700 WP_335793446.1 1602239..1602700(-) (pilA) [Gallibacterium anatis strain OH/Ck/12965/20]
ATGAAAAAACGTGAACAACTTAAGGCGAATTATGCCGGATTTACTTTAATCGAATTGATGATCGTCATTGCGATTATTGC
CGTGTTGGCAACCATTGCCATTCCTTCTTATCAAAATTACACCAAAAAGGCGGCAATATCAGAATTGATTCAGGCCTCTT
CACCCTATAAGGCGGAAGTTGAACTCTGTATTTATAATACTAAGAGTAAAGCAAGCTGTAACGCCGGTCAAAACGGCATT
CAGGCGAAGCCGTCTAATATGGATAAATTTAAATATCTTAAAGAGGTTAATGTGGCTGCCGGTGTTATTTCTGTTTTCGG
TAAACCCAGTCTGGAGAGCATCAGTTATACGATGACACCAAGTGACGGTAATAACGGTGAATTAATTGATTGGAGTGTAA
CTTGTAGCGGTGATAATGGGCTGTTTCCGGCAGGATTTTGTAGCAATACTTCTGCAAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Glaesserella parasuis strain SC1401

54

98.039

0.529
  pilA Haemophilus influenzae Rd KW20

52

98.039

0.51
  pilA Haemophilus influenzae 86-028NP

55.882

88.889

0.497