Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QQA13_RS12225 Genome accession   NZ_CP127409
Coordinates   2630360..2631631 (+) Length   423 a.a.
NCBI ID   WP_108470814.1    Uniprot ID   -
Organism   Rhodanobacter thiooxydans strain C33     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2618899..2632116 2630360..2631631 within 0


Gene organization within MGE regions


Location: 2618899..2632116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA13_RS12170 - 2618899..2620872 (+) 1974 WP_108470967.1 hypothetical protein -
  QQA13_RS12175 - 2620869..2622119 (+) 1251 WP_108470806.1 oligosaccharide flippase family protein -
  QQA13_RS12180 - 2622116..2623087 (-) 972 WP_286042671.1 glycosyltransferase -
  QQA13_RS12185 - 2622972..2623778 (-) 807 WP_199909804.1 TylF/MycF family methyltransferase -
  QQA13_RS12190 - 2623908..2624948 (-) 1041 WP_108470809.1 glycosyltransferase family 4 protein -
  QQA13_RS12195 - 2624945..2626141 (-) 1197 WP_108470810.1 glycosyltransferase family 4 protein -
  QQA13_RS12200 - 2626134..2626847 (-) 714 WP_108470811.1 class I SAM-dependent methyltransferase -
  QQA13_RS12205 - 2626859..2627719 (-) 861 WP_108470812.1 glycosyltransferase family 2 protein -
  QQA13_RS12210 - 2627748..2627903 (-) 156 WP_234411269.1 hypothetical protein -
  QQA13_RS12215 - 2628021..2628080 (-) 60 WP_234411286.1 hypothetical protein -
  QQA13_RS12220 pilB 2628490..2630214 (+) 1725 WP_108470813.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QQA13_RS12225 pilC 2630360..2631631 (+) 1272 WP_108470814.1 type II secretion system F family protein Machinery gene
  QQA13_RS12230 - 2631724..2632116 (+) 393 WP_108470815.1 endonuclease domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46033.40 Da        Isoelectric Point: 10.1657

>NTDB_id=844170 QQA13_RS12225 WP_108470814.1 2630360..2631631(+) (pilC) [Rhodanobacter thiooxydans strain C33]
MATATATNINKARELGAQRAEVSKLTTYEWVALDKRGKRMKGDMPAKNALLVKAELRRQGMNPQTVRERAKPLFGATGST
IKPGDVAIFSRQIATMMASGVPMIQAFDIIADGQKNIRFKNVLLDVKQNIEGGASLHEALGRYPVQFDELYCNLVKAGEA
SGVLDTVLDTVATYKERTEAIKKKIKKALFYPMMVLAVVFIVVLIMLLFVVPVFAKTFQDAGAQLPAPTQLLVTASRFMQ
SYWFVVVGVIGGSIIAIVLAKKRSVKFAHFLDRMALKMPVMGNIVRNSAIARFARTLGVTFRAGVPLVEAMDAVAGATGS
VVYGDAVRQMRDDISVGHQLQLAMKQTGLFPNMVVQMTAIGEESGALDNMLFKVAEFYEEEVSNAVDTLSTLLEPIIMVV
LGTLVGGMVVALYLPIFKLAGTF

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=844170 QQA13_RS12225 WP_108470814.1 2630360..2631631(+) (pilC) [Rhodanobacter thiooxydans strain C33]
ATGGCTACGGCTACCGCAACGAACATCAACAAGGCGCGTGAGCTCGGTGCCCAGCGCGCCGAGGTCAGCAAGCTGACCAC
TTACGAGTGGGTGGCGCTGGACAAGCGTGGCAAGCGCATGAAGGGCGACATGCCGGCGAAGAACGCCTTGCTGGTCAAGG
CCGAACTGCGCCGCCAGGGCATGAACCCGCAGACCGTGCGCGAGCGCGCCAAGCCGCTGTTCGGCGCCACCGGCAGCACC
ATCAAGCCGGGCGACGTGGCCATCTTCAGTCGCCAGATTGCCACCATGATGGCGTCCGGCGTGCCGATGATCCAGGCCTT
CGACATCATTGCCGACGGCCAGAAGAACATCCGCTTCAAGAACGTCCTGCTCGACGTGAAGCAGAACATCGAGGGCGGTG
CGTCGCTGCACGAGGCGCTGGGGCGTTACCCGGTGCAGTTCGACGAGCTGTACTGCAACCTGGTGAAGGCCGGCGAGGCC
TCCGGTGTGCTGGACACCGTGCTGGACACCGTGGCGACCTACAAGGAGCGCACGGAAGCGATCAAGAAGAAGATCAAGAA
AGCGCTGTTCTACCCGATGATGGTGCTGGCGGTGGTATTCATCGTCGTGCTGATCATGTTGCTGTTCGTGGTGCCGGTGT
TCGCCAAGACCTTCCAGGACGCCGGCGCGCAGCTGCCCGCACCCACCCAGCTGCTGGTGACCGCCTCACGGTTCATGCAG
AGTTACTGGTTCGTGGTTGTCGGCGTGATCGGCGGTAGCATCATCGCGATCGTGCTCGCCAAGAAGCGCTCGGTGAAATT
TGCCCACTTCCTCGACCGCATGGCGCTGAAGATGCCGGTGATGGGCAATATCGTGCGCAACTCGGCGATCGCCCGCTTCG
CCCGCACGCTGGGCGTCACCTTCCGTGCCGGCGTACCGCTGGTCGAAGCGATGGACGCGGTGGCCGGTGCCACCGGCAGC
GTGGTCTACGGCGATGCGGTCAGGCAGATGCGCGACGACATCTCGGTCGGCCACCAGCTGCAGCTGGCGATGAAACAGAC
CGGCCTGTTCCCGAACATGGTGGTGCAGATGACCGCGATCGGCGAAGAATCCGGCGCGCTGGACAACATGCTGTTCAAGG
TGGCGGAATTCTACGAGGAAGAAGTCAGCAACGCCGTCGACACTCTCTCCACCTTGCTCGAACCGATCATTATGGTAGTG
CTCGGCACCCTGGTCGGCGGCATGGTGGTGGCCCTGTACCTGCCTATCTTCAAGCTCGCCGGCACGTTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(89-212)

Type II secretion system (T2SS), protein F (T2SSF)

(293-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.418

93.381

0.499
  pilC Pseudomonas stutzeri DSM 10701

52.273

93.617

0.489
  pilC Acinetobacter baylyi ADP1

48.768

95.981

0.468
  pilC Acinetobacter baumannii D1279779

48.99

93.617

0.459
  pilG Neisseria gonorrhoeae MS11

42.559

90.544

0.385
  pilG Neisseria meningitidis 44/76-A

42.67

90.307

0.385