Detailed information NTG0844088

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: QP457_RS05120
• Genome accession: NZ_CP127405
• Coordinates: 1105294..1106457 (+)
• Length: 387 a.a.
• NCBI ID: WP_049467229.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. As-7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1100294..1111457

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QP457_RS05090	soxR	1100470..1100904 (+)	435	WP_032951587.1	redox-sensitive transcriptional activator SoxR	-
QP457_RS05095	-	1100942..1101544 (-)	603	WP_205405056.1	short chain dehydrogenase	-
QP457_RS05100	-	1101643..1102518 (+)	876	WP_180163775.1	LysR family transcriptional regulator	-
QP457_RS05105	proC	1102574..1103395 (-)	822	WP_205405055.1	pyrroline-5-carboxylate reductase	-
QP457_RS05110	-	1103412..1104089 (-)	678	WP_205405054.1	YggS family pyridoxal phosphate-dependent enzyme	-
QP457_RS05115	pilT	1104177..1105214 (+)	1038	WP_004147099.1	type IV pilus twitching motility protein PilT	Machinery gene
QP457_RS05120	pilU	1105294..1106457 (+)	1164	WP_049467229.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
QP457_RS05125	-	1106600..1107583 (+)	984	WP_099819251.1	aldo/keto reductase	-
QP457_RS05130	-	1107657..1108556 (-)	900	WP_205405053.1	LysR family transcriptional regulator	-
QP457_RS05135	-	1108964..1109176 (+)	213	WP_033830520.1	DUF4287 domain-containing protein	-
QP457_RS05140	-	1109503..1110210 (+)	708	WP_099819252.1	YitT family protein	-
QP457_RS05145	-	1110244..1110789 (-)	546	WP_205405052.1	DNA-3-methyladenine glycosylase I	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 43182.62 Da
• Isoelectric Point: 6.6616

>NTDB_id=844088 QP457_RS05120 WP_049467229.1 1105294..1106457(+) (pilU) [Stenotrophomonas sp. As-7]
MPHWEPAVNTTATTIDFTSFLKLMAHQRASDLFITAGMPPAIKVNGKISPITQTPLTPQQSRDLVLNVMTPAQREEFEKT
HECNFAIGLSGVGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPIIKTLAMTKRGIILFVGATGTGKSTSLAAMIGY
RNQNSTGHIITIEDPIEFVHKHEGCIITQREVGIDTDSWEAALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLC
TLHANNANQAMDRIVNFFPEDRRNQLLMDLSLNLKGVVAQQLIPSPDGRSRKVAMEILLGTPLVQDYIRDGEIHKLKELM
KESVQLGMKTFDQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDARTLSQGLDGVEISEVR

Nucleotide

• Length: 1164 bp

>NTDB_id=844088 QP457_RS05120 WP_049467229.1 1105294..1106457(+) (pilU) [Stenotrophomonas sp. As-7]
ATGCCCCATTGGGAGCCCGCCGTGAACACCACCGCGACCACCATCGATTTCACTTCGTTCCTCAAGCTGATGGCGCACCA
GCGCGCCTCGGACCTGTTCATCACCGCTGGCATGCCGCCGGCGATCAAGGTCAACGGCAAGATCTCGCCGATCACCCAGA
CTCCGCTGACGCCGCAGCAGAGCCGCGACCTGGTGCTGAACGTGATGACGCCGGCGCAGCGCGAGGAATTCGAAAAGACC
CACGAATGCAACTTCGCCATCGGCCTGTCCGGTGTCGGCCGCTTCCGTGTGAGCTGTTTCTACCAGCGCAACCAGGTCGG
CATGGTGCTGCGTCGCATCGAGACGCGCATCCCGACCGTGGAAGAGCTGAGCCTGCCGCCGATCATCAAGACGCTGGCGA
TGACCAAGCGCGGCATCATCCTGTTCGTCGGCGCTACCGGTACCGGTAAATCCACGTCGCTGGCCGCGATGATCGGCTAC
CGCAACCAGAATTCGACCGGGCACATCATCACCATCGAAGACCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCAT
CACCCAGCGCGAAGTCGGCATCGATACCGACAGCTGGGAAGCCGCGCTGAAGAACACCCTGCGCCAGGCCCCGGACGTGA
TCATGATCGGCGAGGTGCGTACCCGCGAGGGCATGGACCACGCCATCGCCTTCGCTGAAACCGGTCACCTGGTGCTGTGC
ACCCTGCACGCCAACAATGCCAACCAGGCGATGGACCGCATCGTCAACTTCTTCCCGGAAGATCGCCGCAACCAGCTGCT
GATGGATCTGTCGCTGAACCTCAAGGGCGTGGTCGCGCAGCAGTTGATTCCGTCGCCGGATGGCCGCTCGCGCAAGGTCG
CGATGGAGATCCTGCTGGGCACGCCGCTGGTGCAGGACTACATCCGCGACGGCGAGATCCACAAGCTGAAGGAGCTGATG
AAGGAATCGGTCCAGTTGGGCATGAAGACCTTCGACCAGAGCCTGTTCGAGCTGTACCAGGCCGGTGAGATCAGCTACGA
GGACGCACTGCGCTACGCCGATTCGCAGAACGAAGTGCGCCTGCGCATCAAGCTCAGCCAGGGCGGCGATGCCCGCACCC
TGTCGCAGGGGCTGGATGGGGTGGAGATTTCCGAGGTCCGGTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (129-283)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	67.575	94.832	0.641
pilU	Acinetobacter baylyi ADP1	64.146	92.248	0.592
pilU	Vibrio cholerae strain A1552	53.371	91.99	0.491
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.817	91.731	0.393