Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QRY57_RS01855 Genome accession   NZ_CP127376
Coordinates   40615..40899 (-) Length   94 a.a.
NCBI ID   WP_026593102.1    Uniprot ID   A0A1H3SH03
Organism   Bacillus arachidis strain YX15     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35615..45899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY57_RS01820 (QRY57_01825) tmk 35759..36385 (+) 627 WP_208019203.1 dTMP kinase -
  QRY57_RS01825 (QRY57_01830) holB 36421..37404 (+) 984 WP_090694655.1 DNA polymerase III subunit delta' -
  QRY57_RS01830 (QRY57_01835) - 37410..38237 (+) 828 WP_003194202.1 stage 0 sporulation family protein -
  QRY57_RS01835 (QRY57_01840) yabA 38252..38602 (+) 351 WP_000412052.1 DNA replication initiation control protein YabA -
  QRY57_RS01840 (QRY57_01845) - 38733..39473 (+) 741 WP_286016565.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QRY57_RS01845 (QRY57_01850) - 39460..39750 (+) 291 WP_026593100.1 GIY-YIG nuclease family protein -
  QRY57_RS01850 (QRY57_01855) rsmI 39719..40594 (+) 876 WP_286016566.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QRY57_RS01855 (QRY57_01860) abrB 40615..40899 (-) 285 WP_026593102.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QRY57_RS01860 (QRY57_01865) metG 41236..43245 (+) 2010 WP_286016567.1 methionine--tRNA ligase -
  QRY57_RS01865 (QRY57_01870) - 43425..44192 (+) 768 WP_098302826.1 TatD family hydrolase -
  QRY57_RS01870 (QRY57_01875) - 44341..45570 (+) 1230 WP_286016568.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10458.17 Da        Isoelectric Point: 5.1969

>NTDB_id=843764 QRY57_RS01855 WP_026593102.1 40615..40899(-) (abrB) [Bacillus arachidis strain YX15]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QVLNELQQYIQAAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=843764 QRY57_RS01855 WP_026593102.1 40615..40899(-) (abrB) [Bacillus arachidis strain YX15]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGCCGTGTTGTAATTCCGATTGAATTACGTCGTACATTAGG
TATTGCAGAAAAGGATGCTCTTGAGATTTACGTTGATGACGAAAAAATCATCCTAAAAAAATACAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTTTCTTTAGCTGAAGGTAAAATTATTTTAAGCAAAGAAGGCGCTGAA
CAAGTTTTAAACGAACTTCAACAATATATTCAAGCAGCAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H3SH03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851