Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   QRA07_RS02505 Genome accession   NZ_CP127321
Coordinates   526988..529114 (+) Length   708 a.a.
NCBI ID   WP_233734023.1    Uniprot ID   -
Organism   Acinetobacter pittii strain PC870     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 521988..534114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA07_RS02485 (QRA07_02485) pilM 523939..524997 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  QRA07_RS02490 (QRA07_02490) pilN 524997..525638 (+) 642 WP_233734020.1 PilN domain-containing protein Machinery gene
  QRA07_RS02495 (QRA07_02495) pilO 525635..526387 (+) 753 WP_233734022.1 type 4a pilus biogenesis protein PilO Machinery gene
  QRA07_RS02500 (QRA07_02500) pilP 526398..526925 (+) 528 WP_069030175.1 pilus assembly protein PilP Machinery gene
  QRA07_RS02505 (QRA07_02505) pilQ 526988..529114 (+) 2127 WP_233734023.1 type IV pilus secretin PilQ Machinery gene
  QRA07_RS02510 (QRA07_02510) aroK 529126..529695 (+) 570 WP_002116987.1 shikimate kinase AroK -
  QRA07_RS02515 (QRA07_02515) aroB 529724..530806 (+) 1083 WP_233734024.1 3-dehydroquinate synthase -
  QRA07_RS02520 (QRA07_02520) - 530823..531692 (+) 870 WP_233734025.1 hypothetical protein -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76720.13 Da        Isoelectric Point: 6.5448

>NTDB_id=843394 QRA07_RS02505 WP_233734023.1 526988..529114(+) (pilQ) [Acinetobacter pittii strain PC870]
MNHVFRQFSMGAVAIAIMQIASAQVSMTNIVPTQIAGQGTEIRVIFNGLPPQPQAYQLENPSRLILDFNKAQQNLTQSKV
AIGTDEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSAHVVAKPVSASAMQTQGVSNIGFQRGSQGEGLIV
IDLLGSNTPVDVQQQGSKVVVKTLGSKIPTHLAKRLNVNDFATPVSTIESYNDKGNGVITIQSTGSYEYMAYQAENKLTI
SLKRPQDKSVNISSKPSNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDDEAKALAQTIKLAPIQTDYIRLNYAKAADVLKLIEETRDGKTAVANRTAGSDSLALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIDLIDVQIKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVG
GSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQPARVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGEAPNGELILNKNNINTN
VLVNNGETVILGGVFEQTTSNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=843394 QRA07_RS02505 WP_233734023.1 526988..529114(+) (pilQ) [Acinetobacter pittii strain PC870]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGAGCTGTGGCGATTGCAATTATGCAGATTGCGTCTGCACAGGTCAGCAT
GACTAATATTGTACCGACGCAAATAGCGGGTCAGGGAACAGAAATTCGAGTGATATTTAATGGCTTGCCACCGCAACCAC
AGGCATATCAGCTTGAGAATCCTTCACGTTTGATTTTAGACTTTAATAAAGCGCAGCAGAATTTAACACAGTCAAAAGTG
GCGATTGGAACGGATGAAGCGAGTTCGGTCGATGTAAGCTCTGATGATCAGCGTTCACGTTTAACTGTAAATTTGAAAGA
GGCAGGTGCTTTTACTACTCGTATTGAAGGCAACACTTTTATTTTAAAGATTAATTCTGCGCACGTTGTAGCTAAACCTG
TATCAGCAAGTGCAATGCAAACCCAAGGTGTTTCAAACATCGGCTTCCAACGCGGTAGTCAAGGGGAAGGTCTTATTGTT
ATTGACCTGTTGGGGAGTAATACCCCTGTTGATGTGCAACAACAAGGCAGCAAAGTTGTAGTAAAAACTTTGGGTTCTAA
AATTCCTACTCATTTAGCTAAGCGCTTAAATGTAAATGATTTTGCAACGCCTGTTTCGACCATTGAATCTTATAATGATA
AAGGCAACGGTGTTATTACGATTCAATCTACTGGTAGCTATGAATATATGGCTTATCAGGCGGAAAATAAATTAACCATC
AGCCTCAAGCGTCCTCAAGATAAAAGTGTAAACATTTCATCTAAACCATCTAATTATTCTGGTAATAAGCTTTCTCTTGA
TTTTCAAGATATTGAAGTTCGTCGCGTTTTACAATTACTTGCTGATTTTACTGGCATTAATATGGTTGCGGCTGACAGTG
TGCAAGGTAACATCACTTTGCGTTTAAAAGATGTTCCATGGGATCAGGCACTTGATATTATTTTAAAAACTAAAAATTTA
GATAAACGCAGAAATGGTAATGTAATTTGGATTGCTCCAGTTGCGGAACTGATCAAGGCAGAAGACGATGAGGCAAAAGC
TTTAGCACAAACTATTAAATTAGCACCGATCCAAACAGATTATATTCGTTTGAATTATGCAAAAGCAGCAGATGTCCTTA
AACTAATTGAAGAGACTCGTGATGGCAAGACAGCTGTCGCAAATCGTACAGCAGGTTCAGACTCTCTTGCTTTAGAAAGC
TTATTAAGCTCAAGAGGTAGTGCTGTTGCCGATACGCGTACTAATACTTTGATTGTAAATGATACAGCCCAAAATATTGA
TAAAGTTCGTAAAATGATTGATTTGATTGATGTACAGATCAAACAAGTCATGGTGGAAGCTCGAATTGTAAGAGCCTCTA
CTTCTTTTACCAAAGAGCTTGGCGTTAAATGGGGAATATTATCGCAAGGGATTACCAACAATAATAATTTATTAGTTGGT
GGTAGCGAAACGACCTTATGGAATTTACGAGAGCCCAAAAAGGATGAGACTACGGGTGGTTATAAATACACGATTGAACG
TCCAGATAACTTAAATGTCGATTTAGGTGTAACCAATCCGGCTGGAAGTATTGCCTTTGGCTTGATTAGTATGTCTGATT
TTATGCTTGATCTCGAACTTTCTGCATTACAAGCTGACGGTTATGGTGAGGTGATTTCTACACCTAAAGTGATGACCGCA
GACAAACAACCTGCGAGAGTGGCAACAGGTCAACAAGTTCCTTATCAAACCACGACGAATTCTGCTGCGGGTGCTACAGC
AAGTACATCATTTAAAGATGCACTATTAAGCCTAGATGTTACCCCGAGCATTACGCCTGACGGTAAAATTCAAATGAAAT
TGGATATTTCTAAGGATTCTGTAGCTGGCGAAGCACCTAATGGTGAATTAATTTTAAATAAAAATAATATTAATACCAAT
GTACTTGTTAATAATGGTGAGACAGTCATTTTAGGAGGGGTGTTTGAGCAGACTACTTCTAATTCACAAACCAAGGTTCC
TTTCTTTGGAGACATTCCTGTAGTTGGGCGTTTATTTAGAAAAGATGTGAAATCTGATGATAAGCAAGAGTTACTGATTT
TCGTTACGCCACGAATTGTTAATGACACTTTGGTGAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(39-118)

Bacterial type II and III secretion system protein (Secretin)

(542-700)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

Secretin and TonB N terminus short domain (STN)

(291-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

84.605

100

0.862
  pilQ Acinetobacter baumannii strain A118

84.466

100

0.86
  comQ Acinetobacter baylyi ADP1

73.324

100

0.742
  pilQ Pseudomonas aeruginosa PAK

39.829

99.294

0.395