Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   QRA07_RS02500 Genome accession   NZ_CP127321
Coordinates   526398..526925 (+) Length   175 a.a.
NCBI ID   WP_069030175.1    Uniprot ID   -
Organism   Acinetobacter pittii strain PC870     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 521398..531925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA07_RS02485 (QRA07_02485) pilM 523939..524997 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  QRA07_RS02490 (QRA07_02490) pilN 524997..525638 (+) 642 WP_233734020.1 PilN domain-containing protein Machinery gene
  QRA07_RS02495 (QRA07_02495) pilO 525635..526387 (+) 753 WP_233734022.1 type 4a pilus biogenesis protein PilO Machinery gene
  QRA07_RS02500 (QRA07_02500) pilP 526398..526925 (+) 528 WP_069030175.1 pilus assembly protein PilP Machinery gene
  QRA07_RS02505 (QRA07_02505) pilQ 526988..529114 (+) 2127 WP_233734023.1 type IV pilus secretin PilQ Machinery gene
  QRA07_RS02510 (QRA07_02510) aroK 529126..529695 (+) 570 WP_002116987.1 shikimate kinase AroK -
  QRA07_RS02515 (QRA07_02515) aroB 529724..530806 (+) 1083 WP_233734024.1 3-dehydroquinate synthase -
  QRA07_RS02520 (QRA07_02520) - 530823..531692 (+) 870 WP_233734025.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19299.34 Da        Isoelectric Point: 9.0270

>NTDB_id=843393 QRA07_RS02500 WP_069030175.1 526398..526925(+) (pilP) [Acinetobacter pittii strain PC870]
MKFKQFSLSILACLALAGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALIQTPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=843393 QRA07_RS02500 WP_069030175.1 526398..526925(+) (pilP) [Acinetobacter pittii strain PC870]
ATGAAATTTAAACAATTTTCTCTTTCTATTTTGGCATGTTTAGCTTTAGCTGGATGCGACTCTAGAATCGATGCTGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCAGCGCCTGTTTTTACGCCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGTGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGCGGGCAAGTCATGGCTCTGATCCAAACACCTGATCAACAAATTGAGCGAGTGCAGGTAGGGAACTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATTTGGTGGAGATTGTCCCTGATGGGCGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

88.571

100

0.886
  comL Acinetobacter baylyi ADP1

75.152

94.286

0.709