Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QRA07_RS02490 Genome accession   NZ_CP127321
Coordinates   524997..525638 (+) Length   213 a.a.
NCBI ID   WP_233734020.1    Uniprot ID   -
Organism   Acinetobacter pittii strain PC870     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 519997..530638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA07_RS02470 (QRA07_02470) - 520041..520373 (+) 333 WP_002116981.1 hypothetical protein -
  QRA07_RS02475 (QRA07_02475) rrmA 520376..521200 (+) 825 WP_233734016.1 putative RNA methyltransferase -
  QRA07_RS02480 (QRA07_02480) ponA 521216..523777 (-) 2562 WP_233734018.1 penicillin-binding protein PBP1a -
  QRA07_RS02485 (QRA07_02485) pilM 523939..524997 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  QRA07_RS02490 (QRA07_02490) pilN 524997..525638 (+) 642 WP_233734020.1 PilN domain-containing protein Machinery gene
  QRA07_RS02495 (QRA07_02495) pilO 525635..526387 (+) 753 WP_233734022.1 type 4a pilus biogenesis protein PilO Machinery gene
  QRA07_RS02500 (QRA07_02500) pilP 526398..526925 (+) 528 WP_069030175.1 pilus assembly protein PilP Machinery gene
  QRA07_RS02505 (QRA07_02505) pilQ 526988..529114 (+) 2127 WP_233734023.1 type IV pilus secretin PilQ Machinery gene
  QRA07_RS02510 (QRA07_02510) aroK 529126..529695 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24050.58 Da        Isoelectric Point: 5.4186

>NTDB_id=843391 QRA07_RS02490 WP_233734020.1 524997..525638(+) (pilN) [Acinetobacter pittii strain PC870]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTVNTSVDMNKEVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=843391 QRA07_RS02490 WP_233734020.1 524997..525638(+) (pilN) [Acinetobacter pittii strain PC870]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGACGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTGCGTTTGGTGGATGAATTAGTACG
TGTGACTCCAGCAGCCATGTATTTGACTAAATTCAGCCGAACCGGAGATAAATTTACCATTGAAGGTAAAGCGGAAAGTC
CAAATACAGTTGCAGAGTTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTGTAAGTTCATTGCTTCCTCGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGGGTGACTACAACAGATGATACCGTCAATACATCTGTAGATATGAATAAAGAGGTGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

87.793

100

0.878
  comN Acinetobacter baylyi ADP1

73.333

91.549

0.671