Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LLC_RS00300 Genome accession   NZ_AP024222
Coordinates   50873..51523 (-) Length   216 a.a.
NCBI ID   WP_061777995.1    Uniprot ID   A0AAD1JWM8
Organism   Lactococcus cremoris strain EPSC     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 45873..56523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLC_RS00270 (LLC_00510) - 46064..47596 (+) 1533 WP_015082368.1 Nramp family divalent metal transporter -
  LLC_RS00275 (LLC_00520) - 47670..48638 (+) 969 WP_021165232.1 PhoH family protein -
  LLC_RS00280 (LLC_00530) - 48708..49202 (+) 495 WP_011676092.1 NUDIX hydrolase -
  LLC_RS00285 (LLC_00540) ybeY 49293..49781 (+) 489 WP_011835335.1 rRNA maturation RNase YbeY -
  LLC_RS00290 (LLC_00550) - 49765..50220 (+) 456 WP_011676094.1 diacylglycerol kinase family protein -
  LLC_RS00295 (LLC_00560) - 50237..50815 (+) 579 WP_011676095.1 nucleotidyltransferase family protein -
  LLC_RS00300 (LLC_00570) comFC 50873..51523 (-) 651 WP_061777995.1 ComF family protein Machinery gene
  LLC_RS14520 - 51523..52816 (-) 1294 Protein_59 helicase-related protein -
  LLC_RS00310 (LLC_00590) - 52873..53508 (+) 636 WP_011676097.1 YigZ family protein -
  LLC_RS00315 (LLC_00600) - 53550..54050 (+) 501 WP_014572521.1 VanZ family protein -
  LLC_RS00320 (LLC_00610) - 54116..55135 (+) 1020 WP_032951092.1 DUF475 domain-containing protein -
  LLC_RS00325 (LLC_00620) - 55244..56011 (+) 768 WP_011676099.1 5'-nucleotidase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25230.49 Da        Isoelectric Point: 9.8562

>NTDB_id=84117 LLC_RS00300 WP_061777995.1 50873..51523(-) (comFC) [Lactococcus cremoris strain EPSC]
MQTCLLCSRIIKQTLTFSEFFLLKNNRNLICNKCQSLFKKIPNERCPRCSKSNSKGICADCLKWEEKGIIVNHQSIFIYN
QAMKDYFSLYKFMGDYRLHEVFDSYFKNLSKKIPLVPIPVSPKRLQERGFNQVTAFLKDRAYLDLLEKEDTVRQSSLNRE
GRLSTSNPFKLKEGEKIPQKIILIDDIYTTGTTFYHAIKTLKKANPIEITTFSLCR

Nucleotide


Download         Length: 651 bp        

>NTDB_id=84117 LLC_RS00300 WP_061777995.1 50873..51523(-) (comFC) [Lactococcus cremoris strain EPSC]
ATGCAAACTTGTCTGCTTTGTTCCAGAATTATCAAACAAACACTCACTTTTAGTGAATTCTTTTTACTAAAGAATAACAG
AAATTTAATATGCAATAAATGCCAATCACTGTTTAAAAAAATTCCTAACGAACGTTGTCCTCGTTGCTCTAAATCTAACT
CTAAAGGTATATGTGCTGACTGTCTCAAGTGGGAAGAAAAAGGAATCATTGTTAATCATCAGTCAATTTTTATTTATAAC
CAAGCAATGAAGGATTACTTTAGTCTTTACAAATTTATGGGAGATTATCGATTACACGAAGTCTTCGATTCCTATTTTAA
AAATTTGTCCAAAAAAATTCCTCTGGTTCCCATTCCGGTTTCTCCTAAAAGATTACAAGAAAGAGGTTTTAACCAAGTAA
CAGCTTTTCTAAAAGATAGAGCTTATCTTGATTTGCTTGAAAAAGAGGATACTGTCAGACAATCAAGTCTTAATCGCGAG
GGACGTCTATCAACTAGCAATCCTTTTAAGTTGAAAGAGGGTGAAAAAATACCCCAAAAAATCATTTTGATTGATGATAT
TTATACAACTGGAACTACTTTTTATCATGCAATAAAAACCTTAAAGAAAGCTAATCCGATTGAAATTACAACTTTTTCAC
TCTGCCGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

98.507

62.037

0.611
  comFC/cflB Streptococcus mitis NCTC 12261

49.541

100

0.5
  comFC/cflB Streptococcus pneumoniae Rx1

47.248

100

0.477
  comFC/cflB Streptococcus pneumoniae D39

47.248

100

0.477
  comFC/cflB Streptococcus pneumoniae R6

47.248

100

0.477
  comFC/cflB Streptococcus pneumoniae TIGR4

47.248

100

0.477
  comFC/cflB Streptococcus mitis SK321

47.248

100

0.477
  comFC Bacillus subtilis subsp. subtilis str. 168

34.802

100

0.366

Multiple sequence alignment