Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QN089_RS15595 Genome accession   NZ_CP126689
Coordinates   3110972..3111505 (-) Length   177 a.a.
NCBI ID   WP_068456903.1    Uniprot ID   A0A0X1S084
Organism   Kurthia sp. YJT4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3105972..3116505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN089_RS15575 (QN089_15575) rplI 3107147..3107596 (-) 450 WP_068456915.1 50S ribosomal protein L9 -
  QN089_RS15580 (QN089_15580) - 3107593..3109569 (-) 1977 WP_285215671.1 DHH family phosphoesterase -
  QN089_RS15585 (QN089_15585) - 3109582..3110535 (-) 954 WP_068456909.1 YybS family protein -
  QN089_RS15590 (QN089_15590) rpsR 3110699..3110935 (-) 237 WP_068456906.1 30S ribosomal protein S18 -
  QN089_RS15595 (QN089_15595) ssbA 3110972..3111505 (-) 534 WP_068456903.1 single-stranded DNA-binding protein Machinery gene
  QN089_RS15600 (QN089_15600) rpsF 3111544..3111834 (-) 291 WP_068456899.1 30S ribosomal protein S6 -
  QN089_RS15605 (QN089_15605) - 3111993..3112556 (+) 564 WP_285215672.1 DUF3267 domain-containing protein -
  QN089_RS15610 (QN089_15610) ychF 3112575..3113675 (-) 1101 WP_285215673.1 redox-regulated ATPase YchF -
  QN089_RS15615 (QN089_15615) - 3113752..3113958 (-) 207 WP_068456891.1 DUF951 domain-containing protein -
  QN089_RS15620 (QN089_15620) - 3113961..3114869 (-) 909 WP_231726963.1 mechanosensitive ion channel family protein -
  QN089_RS15625 (QN089_15625) - 3115020..3115859 (-) 840 WP_285215674.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19635.48 Da        Isoelectric Point: 4.9222

>NTDB_id=839435 QN089_RS15595 WP_068456903.1 3110972..3111505(-) (ssbA) [Kurthia sp. YJT4]
MINRVVLVGRLTKDPELRYTPSGVAVARFTLAVNRTFSNQQGERQADFINIVVWRKQAENTANFLRKGSLAGVEGRIQTG
SYDGQDGKKVYTTEVVADSVQFLEPRNAGGGAPQTNQQFGDQPSYGGGQSYNQAPQQNNYQQNQSPNQQNYTRVEQDPFA
MPNDQGKVDISDDDLPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=839435 QN089_RS15595 WP_068456903.1 3110972..3111505(-) (ssbA) [Kurthia sp. YJT4]
ATGATTAACCGTGTTGTATTAGTTGGAAGACTTACAAAAGATCCAGAGCTTCGTTATACGCCATCTGGTGTAGCAGTTGC
ACGTTTTACACTTGCTGTAAACCGTACATTCTCGAACCAACAAGGCGAAAGACAAGCAGACTTCATTAATATCGTCGTTT
GGCGTAAGCAAGCCGAAAACACAGCTAATTTCCTTCGTAAAGGTTCTTTAGCGGGTGTTGAGGGTCGCATCCAAACAGGT
AGTTATGATGGTCAAGATGGTAAAAAAGTTTACACAACTGAAGTTGTTGCAGATAGCGTACAGTTCTTAGAACCTCGCAA
TGCAGGCGGCGGTGCTCCACAAACGAACCAACAATTTGGTGACCAACCATCGTATGGTGGCGGTCAATCGTATAACCAAG
CACCACAGCAAAACAATTATCAGCAAAATCAATCACCAAATCAACAAAACTATACACGTGTAGAACAAGATCCATTTGCG
ATGCCAAATGATCAAGGTAAAGTTGACATCTCAGATGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X1S084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.017

100

0.61
  ssb Latilactobacillus sakei subsp. sakei 23K

52.747

100

0.542
  ssb Glaesserella parasuis strain SC1401

36.559

100

0.384
  ssb Neisseria meningitidis MC58

35.87

100

0.373
  ssb Neisseria gonorrhoeae MS11

35.87

100

0.373
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

59.887

0.367