Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   DGAOKPDK_RS12705 Genome accession   NZ_CP142019
Coordinates   2690258..2691748 (-) Length   496 a.a.
NCBI ID   WP_001166325.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain EMB-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2685258..2696748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGAOKPDK_RS12675 (VOI31_RS12670) gigA 2686251..2687219 (+) 969 WP_000273589.1 RsbU family protein phosphatase GigA -
  DGAOKPDK_RS12680 (VOI31_RS12675) gigB 2687322..2687843 (+) 522 WP_000103065.1 anti-anti-sigma factor GigB -
  DGAOKPDK_RS12685 (VOI31_RS12680) - 2687870..2688694 (+) 825 WP_000177095.1 carbon-nitrogen hydrolase family protein -
  DGAOKPDK_RS12690 (VOI31_RS12685) - 2688709..2689086 (+) 378 WP_000266120.1 DUF4951 domain-containing protein -
  DGAOKPDK_RS12695 (VOI31_RS12690) - 2689247..2689684 (+) 438 WP_000371731.1 MarR family winged helix-turn-helix transcriptional regulator -
  DGAOKPDK_RS12700 (VOI31_RS12695) - 2689772..2690203 (+) 432 WP_000051124.1 organic hydroperoxide resistance protein -
  DGAOKPDK_RS12705 (VOI31_RS12700) pilB 2690258..2691748 (-) 1491 WP_001166325.1 type II secretion system ATPase GspE Machinery gene
  DGAOKPDK_RS12710 (VOI31_RS12705) - 2691845..2692666 (+) 822 WP_000462729.1 hypothetical protein -
  DGAOKPDK_RS12715 (VOI31_RS12710) - 2692676..2693593 (+) 918 WP_000785638.1 mechanosensitive ion channel family protein -
  DGAOKPDK_RS12720 (VOI31_RS12715) - 2693583..2696387 (-) 2805 WP_324641729.1 DUF2339 domain-containing protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55415.36 Da        Isoelectric Point: 6.1277

>NTDB_id=839280 DGAOKPDK_RS12705 WP_001166325.1 2690258..2691748(-) (pilB) [Acinetobacter baumannii strain EMB-1]
MQILKQIQVPYSFAKRHGVLFRYDGDQVFIVRRQNTEKIALQEARRILGKPAYYQLCTEQEFNSLLSTSYAGDTGESQQV
AAGLEDHPDLLSLADQVPETEDLMDQEDDAPIVRLINALLSEAIRVGASDIHIEAFEKKLSVRLRVDGQLREIVQPRREL
APLLVSRIKVMAKLDIAEKRVPQDGRISLRLAGREVDVRVSTLPSSHGERVVMRLLDKQAGRLNMTHLGLMANDYERLTQ
LVHRPHGIILVTGPTGSGKTTTLYAALSDLNDNTRNILTAEDPIEYQLEGIGQTQVNTKVDMTFARALKAMLRQDPDVVM
VGEIRDLETAEIAVQASLTGHLVLSTLHTNTAIGAVTRLKDMGIEPFLLSSSLIGVVAQRLVRTLCPHCMTWREADTFEK
QVFQHIFHEPSLKLPEAQGCDQCSHLGFNGRTAIYEIVPIDEPMRRLIHGNAAEFELENHARQYSGSIRDDGLRKVLSGK
TTLEEVLRVTNEASEA

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=839280 DGAOKPDK_RS12705 WP_001166325.1 2690258..2691748(-) (pilB) [Acinetobacter baumannii strain EMB-1]
ATGCAAATATTGAAACAAATACAAGTTCCATATAGTTTTGCCAAGCGTCATGGTGTTTTATTTCGTTATGACGGTGATCA
AGTTTTTATTGTTAGACGTCAAAATACAGAAAAAATTGCATTGCAGGAAGCAAGACGAATTTTGGGGAAACCTGCATACT
ATCAATTATGCACTGAACAAGAATTCAATAGTCTATTAAGTACCAGTTATGCAGGGGATACAGGTGAATCTCAACAAGTA
GCTGCGGGCTTAGAAGACCATCCGGATTTATTAAGCCTTGCAGATCAGGTGCCTGAAACAGAAGACTTAATGGATCAAGA
GGATGACGCGCCTATTGTTCGTCTAATCAATGCTCTTCTCTCTGAGGCAATTCGAGTAGGAGCTTCAGATATCCATATTG
AAGCTTTTGAAAAAAAGCTATCAGTTCGTTTACGGGTAGATGGTCAATTACGTGAAATTGTGCAGCCACGCCGTGAACTA
GCCCCGTTACTTGTTTCGCGTATTAAAGTTATGGCGAAACTCGATATTGCTGAAAAGCGTGTACCGCAAGATGGACGTAT
TTCTTTACGTCTTGCTGGTCGTGAAGTCGATGTCCGTGTTTCAACTTTGCCATCGTCACATGGTGAAAGGGTGGTCATGC
GTTTACTCGATAAACAAGCGGGTCGCCTTAATATGACTCACCTAGGTTTAATGGCAAATGACTATGAACGTTTAACTCAG
CTAGTACATCGTCCGCACGGTATTATTTTGGTCACAGGGCCTACTGGTTCGGGGAAAACGACGACTTTATATGCTGCCTT
ATCTGATCTAAATGACAACACCCGTAACATCTTAACTGCCGAAGATCCAATTGAGTATCAGCTTGAAGGTATTGGCCAAA
CTCAAGTGAATACCAAAGTGGATATGACATTTGCTCGTGCTTTAAAGGCAATGTTACGTCAAGATCCAGATGTGGTCATG
GTGGGGGAGATTCGTGATCTAGAAACTGCTGAAATTGCGGTGCAGGCATCCTTAACAGGTCATTTGGTTTTATCGACGCT
ACATACCAATACTGCTATTGGTGCAGTGACTCGTCTTAAAGATATGGGGATTGAACCTTTCCTGCTTTCAAGCTCTTTAA
TTGGGGTGGTTGCGCAGCGTTTGGTTCGTACTTTATGTCCACATTGTATGACATGGCGTGAAGCCGATACTTTTGAGAAG
CAAGTTTTTCAGCATATTTTCCATGAACCAAGTTTAAAGTTACCAGAGGCTCAAGGGTGTGATCAGTGTTCTCATTTAGG
GTTTAATGGCCGTACAGCGATTTATGAAATTGTACCTATTGATGAACCTATGCGCCGTCTCATTCATGGTAATGCAGCTG
AATTTGAATTAGAAAATCATGCTCGTCAGTATTCTGGTTCTATTCGCGATGATGGTTTACGTAAGGTGCTCTCAGGTAAA
ACTACACTTGAAGAAGTGCTTCGTGTAACCAATGAAGCAAGTGAAGCATAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(118-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Legionella pneumophila strain ERS1305867

41.803

98.387

0.411
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.057

99.194

0.407
  pilF Thermus thermophilus HB27

39.351

99.395

0.391
  pilB Vibrio cholerae strain A1552

48.13

80.847

0.389
  pilB Vibrio campbellii strain DS40M4

48.371

80.444

0.389
  pilB Vibrio parahaemolyticus RIMD 2210633

48

80.645

0.387
  pilF Neisseria gonorrhoeae MS11

48.477

79.435

0.385
  pilB/pilB1 Synechocystis sp. PCC 6803

40.34

94.96

0.383
  pilB Acinetobacter baumannii D1279779

47.264

81.048

0.383
  pilB Acinetobacter baylyi ADP1

47.315

78.831

0.373