Detailed information NTG0839142

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: VOI49_RS00385
• Genome accession: NZ_CP142018
• Coordinates: 59650..60648 (+)
• Length: 332 a.a.
• NCBI ID: WP_226314012.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae strain lu24
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 54650..65648

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VOI49_RS00360	purK	54668..55753 (+)	1086	WP_003049077.1	5-(carboxyamino)imidazole ribonucleotide synthase	-
VOI49_RS00365	purB	55763..57055 (+)	1293	WP_003049079.1	adenylosuccinate lyase	-
VOI49_RS00370	comR	57197..58108 (+)	912	WP_115246948.1	helix-turn-helix domain-containing protein	Regulator
VOI49_RS00375	-	58165..59340 (-)	1176	WP_243093136.1	IS256 family transposase	-
VOI49_RS00380	comS	59518..59616 (+)	99	WP_014611913.1	quorum-sensing system DWW-type pheromone	Regulator
VOI49_RS00385	ruvB	59650..60648 (+)	999	WP_226314012.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
VOI49_RS00390	-	60783..61214 (+)	432	WP_003049087.1	low molecular weight protein-tyrosine-phosphatase	-
VOI49_RS00395	-	61243..61644 (+)	402	WP_003049089.1	MORN repeat-containing protein	-
VOI49_RS00400	-	61641..63416 (+)	1776	WP_226314013.1	acyltransferase family protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37417.87 Da
• Isoelectric Point: 4.5227

>NTDB_id=839142 VOI49_RS00385 WP_226314012.1 59650..60648(+) (ruvB) [Streptococcus dysgalactiae strain lu24]
MTRILDNDVMGDEELVERTLRPKYLREYIGQDKVKEQLNIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELEVNL
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAGDTSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYQEADLTEIIERTADIFDMEIVHEAAQELACRSRGTPRIANRLLKRVRDYAQIVGDGVIT
AQITDKALTMLDVDREGLDYVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFLMRTRTGRVVTEK
AYRHLGYPYPSN

Nucleotide

• Length: 999 bp

>NTDB_id=839142 VOI49_RS00385 WP_226314012.1 59650..60648(+) (ruvB) [Streptococcus dysgalactiae strain lu24]
ATGACTAGAATTTTAGATAATGATGTAATGGGGGATGAAGAGCTTGTTGAGCGAACGCTTCGTCCGAAGTATTTGCGTGA
GTACATTGGGCAAGATAAGGTTAAGGAGCAATTAAACATTTTTATTGAAGCGGCTAAGCTTCGTGATGAATCTTTAGATC
ATGTGTTGTTGTTTGGCCCTCCAGGTTTAGGGAAAACCACAATGGCATTTGTGATTGCTAATGAATTAGAGGTTAATCTG
AAACAAACATCTGGTCCGGCAATCGAGAAGGCTGGCGATTTGGTAGCTATTTTGAATGATCTGGAACCAGGAGATGTGCT
CTTTATTGATGAAATTCATCGTCTGCCTATGGCAGTCGAAGAAGTATTGTACAGTGCTATGGAAGATTTTTACATCGATA
TCATGATTGGTGCTGGGGACACTAGTCGAAGTGTTCATTTGGATTTACCACCTTTTACATTGATTGGAGCTACAACACGA
GCTGGGATGTTGTCAAATCCTTTGCGAGCTCGATTTGGCATTACTGGACACATGGAATACTATCAGGAAGCTGATTTGAC
TGAAATTATCGAACGAACAGCTGATATTTTTGACATGGAAATTGTTCATGAAGCGGCTCAAGAGTTAGCTTGCCGTAGTC
GGGGAACACCGCGTATTGCTAATAGATTGTTAAAGCGGGTACGTGATTATGCTCAGATTGTTGGAGATGGCGTCATCACG
GCTCAGATTACAGACAAAGCCCTAACCATGCTTGATGTTGACCGAGAAGGTCTTGATTATGTAGATCAGAAGATTTTACG
AACCATGATTGAAATGTATCAGGGTGGACCGGTTGGGTTAGGCACTTTATCAGTTAATATTGCAGAAGAACGTGATACAG
TTGAAGACATGTACGAACCTTATCTGATTCAAAAAGGATTTCTAATGCGTACACGAACTGGTCGTGTAGTGACGGAAAAA
GCCTATCGTCATCTTGGTTATCCATATCCGTCTAACTAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	89.058	99.096	0.883
ruvB	Streptococcus pneumoniae R6	88.754	99.096	0.88
ruvB	Streptococcus pneumoniae D39	88.754	99.096	0.88
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.451	98.795	0.587
ruvB	Helicobacter pylori 26695	50.92	98.193	0.5
ruvB	Synechocystis sp. PCC 6803	49.686	95.783	0.476