Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   F0321_RS20975 Genome accession   NZ_CP126610
Coordinates   4387355..4388875 (+) Length   506 a.a.
NCBI ID   WP_126331046.1    Uniprot ID   -
Organism   Enterobacter asburiae strain E2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4382355..4393875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0321_RS20950 (F0321_20950) ilvE 4383921..4384850 (-) 930 WP_023309654.1 branched-chain-amino-acid transaminase -
  F0321_RS20955 (F0321_20955) ilvM 4384869..4385132 (-) 264 WP_024907956.1 acetolactate synthase 2 small subunit -
  F0321_RS20960 (F0321_20960) ilvG 4385129..4386775 (-) 1647 WP_126331048.1 acetolactate synthase 2 catalytic subunit -
  F0321_RS20965 (F0321_20965) ilvX 4386778..4386828 (-) 51 WP_166792073.1 peptide IlvX -
  F0321_RS20970 (F0321_20970) ilvL 4386915..4387013 (-) 99 WP_001311244.1 ilv operon leader peptide -
  F0321_RS20975 (F0321_20975) comM 4387355..4388875 (+) 1521 WP_126331046.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  F0321_RS20980 (F0321_20980) - 4388906..4389244 (-) 339 WP_023309658.1 DUF413 domain-containing protein -
  F0321_RS20985 (F0321_20985) hdfR 4389363..4390184 (+) 822 WP_047652198.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54937.88 Da        Isoelectric Point: 6.8204

>NTDB_id=839141 F0321_RS20975 WP_126331046.1 4387355..4388875(+) (comM) [Enterobacter asburiae strain E2]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDVIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAEVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=839141 F0321_RS20975 WP_126331046.1 4387355..4388875(+) (comM) [Enterobacter asburiae strain E2]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCGGTCGAGGTTCATTTGAGCAA
TGGGCTACCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTTGT
TGGCGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGAGCAGGGC
GGCAAATCATTGTCGCCAATGAAAATGCATCAGAAGTGAGTCTTATTGCCGAGAAAGGGTGTCTCATCGCCGGGCATTTA
CAGGAAGTTTGTGCGTGGCTGGAAGGACGGCATGAACTGTCCGAGCCGGAGGAATGTGATGATGTTATAGCGGATGCACC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCGGCAGGTGGACACAATCTTC
TGTTAATTGGCCCGCCGGGTACGGGGAAAACGATGCTGGCGAGCAGGCTGAGCGGGTTGCTTCCACCGCTCAATAACCAT
GAAGCGCTGGAAAGCGCCGCCATATATAGCCTCATCAGCTCTGCCTCGTTGCAAAAACAGTGGCGCCGCCGTCCTTTTCG
TTCGCCGCATCATAGCGCTTCACTGACGGCAATGGTTGGCGGCGGGTCTATCCCCGGGCCGGGTGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTTGACGAGCTGCCGGAGTTTGAGCGCCGCGTGCTGGATGCACTGAGGGAGCCCATTGAATCC
GGTGAGATACATATCTCACGCACGCGGGCGAAAATAAGCTATCCCGCGCAGTTTCAGCTGGTCGCGGCGATGAATCCCAG
CCCGACGGGTCACTACCAGGGAAACCATAACCGCTGTACGCCAGAGCAGACGCTACGCTATCTGGGTAAGTTATCAGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATCCCCCTTCCCCCGCCGGGTCTGCTCAGGCAAACGGGCATAACGGGT
GAAAGCTCAGCGGAGGTACGCGAACGTGTGATTGCGGCCCAGACGCGGCAGTACGCTCGTCAGAACAGGTTGAATGCGCG
GCTGGATAACGCCGGGATCCGGCAGTTTTGTTCTCTTAACGTCGAAGATGCGGGATGGCTGGAGGAGACGTTGACGCGGT
TCGGGCTGTCCATACGTGCGTGGCAGCGTTTGTTGAAGGTGGCCAGAACCATTGCTGACGTAGAGGGATGCACTGACATT
GAGAGGAAACATTTGCAAGAGGCGCTGAGCTACCGTGCCATCGATCGTTTGCTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.153

100

0.585
  comM Vibrio campbellii strain DS40M4

58.648

99.407

0.583
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.441