Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   VOI49_RS00380 Genome accession   NZ_CP142018
Coordinates   59518..59616 (+) Length   32 a.a.
NCBI ID   WP_014611913.1    Uniprot ID   A0ABU0A8X6
Organism   Streptococcus dysgalactiae strain lu24     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 54518..64616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS00360 purK 54668..55753 (+) 1086 WP_003049077.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VOI49_RS00365 purB 55763..57055 (+) 1293 WP_003049079.1 adenylosuccinate lyase -
  VOI49_RS00370 comR 57197..58108 (+) 912 WP_115246948.1 helix-turn-helix domain-containing protein Regulator
  VOI49_RS00375 - 58165..59340 (-) 1176 WP_243093136.1 IS256 family transposase -
  VOI49_RS00380 comS 59518..59616 (+) 99 WP_014611913.1 quorum-sensing system DWW-type pheromone Regulator
  VOI49_RS00385 ruvB 59650..60648 (+) 999 WP_226314012.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  VOI49_RS00390 - 60783..61214 (+) 432 WP_003049087.1 low molecular weight protein-tyrosine-phosphatase -
  VOI49_RS00395 - 61243..61644 (+) 402 WP_003049089.1 MORN repeat-containing protein -
  VOI49_RS00400 - 61641..63416 (+) 1776 WP_226314013.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3771.59 Da        Isoelectric Point: 10.4764

>NTDB_id=839141 VOI49_RS00380 WP_014611913.1 59518..59616(+) (comS) [Streptococcus dysgalactiae strain lu24]
MFKKIKPYLLLAAVVAFKVARAMNEFDWWNLG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=839141 VOI49_RS00380 WP_014611913.1 59518..59616(+) (comS) [Streptococcus dysgalactiae strain lu24]
ATGTTTAAAAAAATCAAACCATATTTGTTATTAGCTGCAGTCGTTGCTTTCAAAGTTGCTCGTGCAATGAACGAATTTGA
TTGGTGGAACCTAGGGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

84.375

100

0.844
  comS Streptococcus pyogenes MGAS8232

45.161

96.875

0.437