Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   QMK35_RS06550 Genome accession   NZ_CP126540
Coordinates   1373816..1374133 (+) Length   105 a.a.
NCBI ID   WP_107505267.1    Uniprot ID   -
Organism   Staphylococcus cohnii strain SDAQ-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1368816..1379133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK35_RS06520 (QMK35_06520) - 1369278..1369478 (+) 201 WP_181187593.1 YqgQ family protein -
  QMK35_RS06525 (QMK35_06525) - 1369788..1370774 (+) 987 WP_285159959.1 glucokinase -
  QMK35_RS06530 (QMK35_06530) - 1370774..1371097 (+) 324 WP_107385048.1 MTH1187 family thiamine-binding protein -
  QMK35_RS06535 (QMK35_06535) - 1371100..1371723 (+) 624 WP_107385049.1 MBL fold metallo-hydrolase -
  QMK35_RS06540 (QMK35_06540) comGA 1371783..1372757 (+) 975 WP_107386654.1 competence type IV pilus ATPase ComGA Machinery gene
  QMK35_RS06545 (QMK35_06545) comGB 1372729..1373796 (+) 1068 WP_233431500.1 competence type IV pilus assembly protein ComGB -
  QMK35_RS06550 (QMK35_06550) comGC 1373816..1374133 (+) 318 WP_107505267.1 competence type IV pilus major pilin ComGC Machinery gene
  QMK35_RS06555 (QMK35_06555) comGD 1374123..1374563 (+) 441 WP_107386699.1 competence type IV pilus minor pilin ComGD -
  QMK35_RS06560 (QMK35_06560) comGF 1374815..1375258 (+) 444 WP_107386709.1 competence type IV pilus minor pilin ComGF -
  QMK35_RS06565 (QMK35_06565) - 1375423..1375947 (+) 525 WP_107385157.1 shikimate kinase -
  QMK35_RS06570 (QMK35_06570) gcvT 1376105..1377196 (+) 1092 WP_107385156.1 glycine cleavage system aminomethyltransferase GcvT -
  QMK35_RS06575 (QMK35_06575) gcvPA 1377214..1378566 (+) 1353 WP_107386608.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11754.83 Da        Isoelectric Point: 9.7116

>NTDB_id=838680 QMK35_RS06550 WP_107505267.1 1373816..1374133(+) (comGC) [Staphylococcus cohnii strain SDAQ-1]
MNKTKRTFNKRAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQSTGCEAQIKMIESQVEAFTLKHNKKPQSIDELIADG
YIKENQKNCKSGSTITINNGEVIAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=838680 QMK35_RS06550 WP_107505267.1 1373816..1374133(+) (comGC) [Staphylococcus cohnii strain SDAQ-1]
ATGAACAAAACAAAACGAACTTTTAATAAGCGTGCATTTACTTTAATTGAAATGCTCCTTGTATTATTAATTATAAGCTT
ATTATTGATTTTGATTATACCCAATATTGCAAAACAATCTTCACATATTCAAAGTACTGGTTGTGAAGCACAAATAAAAA
TGATTGAAAGTCAAGTTGAAGCATTTACTCTAAAACATAATAAAAAACCACAGTCTATAGATGAACTTATTGCGGATGGC
TATATCAAAGAAAACCAAAAAAATTGTAAATCAGGATCAACCATTACAATTAACAACGGTGAAGTAATTGCAAACTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

76.842

90.476

0.695
  comGC Staphylococcus aureus MW2

76.842

90.476

0.695
  comGC Bacillus subtilis subsp. subtilis str. 168

43.158

90.476

0.39
  comYC Streptococcus mutans UA159

46.067

84.762

0.39
  comYC Streptococcus mutans UA140

46.067

84.762

0.39
  comGC/cglC Streptococcus mitis SK321

44.444

85.714

0.381
  comGC/cglC Streptococcus mitis NCTC 12261

41.053

90.476

0.371
  comYC Streptococcus gordonii str. Challis substr. CH1

42.697

84.762

0.362