NTDB

Overview

Name	comEA	Type	Machinery gene
Locus tag	QN218_RS05790	Genome accession	NZ_CP126534
Coordinates	1113314..1113931 (+)	Length	205 a.a.
NCBI ID	WP_060399060.1	Uniprot ID	A0A9Q4HTS0
Organism	Bacillus inaquosorum strain BSY82
Function	dsDNA binding to the cell surface (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1108314..1118931

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QN218_RS05755	aroE	1108972..1109814 (+)	843	WP_060399063.1	shikimate dehydrogenase	-
QN218_RS05760	yhbY	1109808..1110098 (+)	291	WP_003226133.1	ribosome assembly RNA-binding protein YhbY	-
QN218_RS05765	-	1110110..1110679 (+)	570	WP_019258940.1	nicotinate-nucleotide adenylyltransferase	-
QN218_RS05770	yqeK	1110669..1111229 (+)	561	WP_003237115.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	-
QN218_RS05775	rsfS	1111247..1111603 (+)	357	WP_003237112.1	ribosome silencing factor	-
QN218_RS05780	-	1111600..1112343 (+)	744	WP_060399062.1	class I SAM-dependent methyltransferase	-
QN218_RS05785	comER	1112409..1113230 (-)	822	WP_060399061.1	late competence protein ComER	-
QN218_RS05790	comEA	1113314..1113931 (+)	618	WP_060399060.1	helix-hairpin-helix domain-containing protein	Machinery gene
QN218_RS05795	-	1113998..1114567 (+)	570	WP_003237106.1	ComE operon protein 2	-
QN218_RS05800	comEC	1114571..1116901 (+)	2331	WP_060400041.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
QN218_RS05805	-	1116941..1117075 (-)	135	WP_003229983.1	YqzM family protein	-
QN218_RS05810	-	1117116..1117265 (+)	150	WP_003229985.1	hypothetical protein	-
QN218_RS05815	holA	1117305..1118348 (+)	1044	WP_060399059.1	DNA polymerase III subunit delta	-
QN218_RS05820	rpsT	1118363..1118629 (-)	267	WP_003229989.1	30S ribosomal protein S20	-

Sequence

Protein

Download Length: 205 a.a. Molecular weight: 21754.65 Da Isoelectric Point: 4.9529

                                >NTDB_id=838543 QN218_RS05790 WP_060399060.1 1113314..1113931(+) (comEA) [Bacillus inaquosorum strain BSY82]

MNWLNQYKKTIILAASAAVFIAAIFIFASGKNKGPVKQAVSTETENAEVKQEAVKDESNKTIVIDIKGAVLHPGVYEMRT

GDRVSQAIEKAGGASEQADEMQVNLAELLQDGTVVYIPKKGEETAVQQGAVGAVQSDGGKGALVNINTATLDELQGISGV

GPSKAEAIIAYREENGRFQTIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide

Download Length: 618 bp

                                >NTDB_id=838543 QN218_RS05790 WP_060399060.1 1113314..1113931(+) (comEA) [Bacillus inaquosorum strain BSY82]

ATGAATTGGTTGAATCAGTATAAAAAAACAATAATTTTAGCGGCTTCTGCGGCTGTTTTCATAGCGGCTATTTTCATCTT

TGCCAGCGGAAAAAACAAAGGGCCGGTGAAGCAGGCTGTATCAACTGAGACAGAAAATGCGGAGGTAAAGCAGGAAGCAG

TCAAAGACGAGTCAAACAAAACAATAGTGATAGACATTAAAGGTGCTGTTCTGCATCCTGGCGTTTATGAAATGCGAACA

GGGGACAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGGCCAGTGAACAAGCAGACGAAATGCAAGTGAACTTGGCGGA

GCTGCTTCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAGACGGCGGTGCAGCAAGGAGCCGTAGGCGCTG

TTCAAAGCGATGGAGGGAAGGGAGCGCTCGTAAATATCAATACAGCCACCTTAGACGAATTACAAGGCATCTCAGGGGTG

GGACCGTCAAAAGCTGAAGCTATTATTGCATACCGGGAGGAAAACGGGCGTTTCCAGACAATTGAAGATATCACTAAGGT

TTCAGGAATAGGTGAAAAGTCGTTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(142-203)

SLBB domain (SLBB)

(63-118)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comEA	Bacillus subtilis subsp. subtilis str. 168	88.293	100	0.883
comEA	Staphylococcus aureus MW2	38.636	100	0.415
comEA	Staphylococcus aureus N315	37.273	100	0.4
comEA	Lactococcus lactis subsp. cremoris KW2	35.78	100	0.38
comEA/celA/cilE	Streptococcus pneumoniae R6	36.715	100	0.371
comEA/celA/cilE	Streptococcus pneumoniae Rx1	36.715	100	0.371
comEA/celA/cilE	Streptococcus pneumoniae D39	36.715	100	0.371

Detailed information NTG0838543