Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | VA249_RS04190 | Genome accession | NZ_AP024165 |
| Coordinates | 897368..897682 (+) | Length | 104 a.a. |
| NCBI ID | WP_128811308.1 | Uniprot ID | - |
| Organism | Vibrio alfacsensis strain 04Ya108 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 892368..902682
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VA249_RS04180 (VYA_07970) | - | 894811..895083 (+) | 273 | WP_128811310.1 | HU family DNA-binding protein | - |
| VA249_RS04185 (VYA_07980) | ppiD | 895319..897178 (+) | 1860 | WP_221069060.1 | peptidylprolyl isomerase | - |
| VA249_RS04190 (VYA_07990) | comEA | 897368..897682 (+) | 315 | WP_128811308.1 | ComEA family DNA-binding protein | Machinery gene |
| VA249_RS04195 (VYA_08000) | rrtA | 897825..898376 (-) | 552 | WP_221069061.1 | rhombosortase | - |
| VA249_RS04200 | - | 898380..898997 (+) | 618 | WP_221069062.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| VA249_RS04205 (VYA_08020) | - | 899080..900402 (-) | 1323 | WP_221069063.1 | anti-phage deoxyguanosine triphosphatase | - |
| VA249_RS04210 (VYA_08030) | yfbR | 900418..901002 (-) | 585 | WP_221069064.1 | 5'-deoxynucleotidase | - |
| VA249_RS04215 (VYA_08040) | - | 901116..902330 (-) | 1215 | WP_128811305.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11195.71 Da Isoelectric Point: 5.8294
>NTDB_id=83720 VA249_RS04190 WP_128811308.1 897368..897682(+) (comEA) [Vibrio alfacsensis strain 04Ya108]
MKWILTISLMLLSSLAWATDSQTGSAETSSNKAAKYDGIEITVNVNTASAQEIASLLNGIGEKKAQDIVDYRKEHGPFKT
AADLTNVKGIGDATVKKNEDRILL
MKWILTISLMLLSSLAWATDSQTGSAETSSNKAAKYDGIEITVNVNTASAQEIASLLNGIGEKKAQDIVDYRKEHGPFKT
AADLTNVKGIGDATVKKNEDRILL
Nucleotide
Download Length: 315 bp
>NTDB_id=83720 VA249_RS04190 WP_128811308.1 897368..897682(+) (comEA) [Vibrio alfacsensis strain 04Ya108]
ATGAAATGGATTTTAACAATAAGCTTAATGTTGTTGAGCTCTTTAGCTTGGGCTACAGACAGCCAAACTGGCAGCGCAGA
GACATCAAGCAATAAAGCAGCAAAGTATGACGGAATTGAAATTACCGTAAACGTGAATACCGCTTCGGCACAAGAAATTG
CGAGTTTGCTTAACGGTATCGGTGAAAAGAAAGCACAAGATATCGTTGATTACCGCAAGGAGCATGGGCCATTTAAAACG
GCTGCAGATTTGACGAATGTAAAAGGTATTGGCGATGCTACCGTGAAGAAAAACGAGGATCGAATCCTACTTTAA
ATGAAATGGATTTTAACAATAAGCTTAATGTTGTTGAGCTCTTTAGCTTGGGCTACAGACAGCCAAACTGGCAGCGCAGA
GACATCAAGCAATAAAGCAGCAAAGTATGACGGAATTGAAATTACCGTAAACGTGAATACCGCTTCGGCACAAGAAATTG
CGAGTTTGCTTAACGGTATCGGTGAAAAGAAAGCACAAGATATCGTTGATTACCGCAAGGAGCATGGGCCATTTAAAACG
GCTGCAGATTTGACGAATGTAAAAGGTATTGGCGATGCTACCGTGAAGAAAAACGAGGATCGAATCCTACTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
69.231 |
100 |
0.692 |
| comEA | Vibrio campbellii strain DS40M4 |
68.269 |
100 |
0.683 |
| comEA | Vibrio cholerae C6706 |
57.447 |
90.385 |
0.519 |
| comEA | Vibrio cholerae strain A1552 |
57.447 |
90.385 |
0.519 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
38.318 |
100 |
0.394 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
46.429 |
80.769 |
0.375 |