Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QNH42_RS25555 Genome accession   NZ_CP126108
Coordinates   4584062..4584487 (-) Length   141 a.a.
NCBI ID   WP_349632384.1    Uniprot ID   -
Organism   Cytobacillus firmus strain SQ11     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4579062..4589487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH42_RS23210 (QNH42_23210) - 4579877..4580356 (-) 480 WP_283935064.1 flagellar protein FlgN -
  QNH42_RS23215 (QNH42_23215) flgM 4580372..4580638 (-) 267 WP_095243411.1 flagellar biosynthesis anti-sigma factor FlgM -
  QNH42_RS23220 (QNH42_23220) - 4580783..4581214 (-) 432 WP_197218165.1 TIGR03826 family flagellar region protein -
  QNH42_RS23225 (QNH42_23225) - 4581286..4583865 (-) 2580 WP_283935065.1 EAL domain-containing protein -
  QNH42_RS25555 comFC 4584062..4584487 (-) 426 WP_349632384.1 ComF family protein Machinery gene
  QNH42_RS25560 - 4584575..4584763 (-) 189 Protein_4508 double zinc ribbon domain-containing protein -
  QNH42_RS23235 (QNH42_23235) - 4584759..4586228 (-) 1470 WP_283935827.1 DEAD/DEAH box helicase -
  QNH42_RS23240 (QNH42_23240) - 4586458..4587297 (-) 840 WP_283935066.1 DegV family protein -
  QNH42_RS23245 (QNH42_23245) - 4587514..4587792 (+) 279 WP_250801185.1 hypothetical protein -
  QNH42_RS23250 (QNH42_23250) - 4588008..4588688 (-) 681 WP_095243405.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 16212.68 Da        Isoelectric Point: 9.8727

>NTDB_id=836374 QNH42_RS25555 WP_349632384.1 4584062..4584487(-) (comFC) [Cytobacillus firmus strain SQ11]
MKETIARYKFRGDYILAKAFSPFIIERLQFLHFDFLVPIPLSHERLYERGFNQSSALIQEAGFTSVELLQRSHSEKQSKK
SRKERIHLTQVFELFPDSAVKDKNLLLIDDIYTTGSTLYHAAKVLKERGAASVCSFTLARG

Nucleotide


Download         Length: 426 bp        

>NTDB_id=836374 QNH42_RS25555 WP_349632384.1 4584062..4584487(-) (comFC) [Cytobacillus firmus strain SQ11]
TTGAAAGAGACAATTGCCCGCTATAAGTTCCGCGGTGATTATATCCTAGCTAAAGCATTCTCCCCTTTCATAATTGAAAG
ACTCCAGTTTCTTCATTTCGACTTCCTCGTTCCCATCCCACTAAGTCATGAGCGGCTTTACGAAAGAGGATTCAATCAAT
CATCTGCCCTTATTCAGGAAGCAGGCTTTACATCTGTAGAGCTTCTTCAGCGCAGCCACTCGGAAAAACAATCAAAAAAA
TCGCGAAAAGAGCGCATACATCTAACACAGGTCTTCGAGTTATTTCCCGATTCAGCGGTTAAAGACAAGAACCTCCTCCT
CATCGACGATATTTATACAACTGGATCTACTTTATACCATGCAGCGAAGGTTTTGAAGGAAAGAGGAGCTGCATCGGTAT
GTTCATTTACATTGGCAAGAGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(66-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

47.222

100

0.482
  comFC/cflB Streptococcus mitis NCTC 12261

45.775

100

0.461
  comFC/cflB Streptococcus mitis SK321

44.681

100

0.447
  comFC/cflB Streptococcus pneumoniae R6

43.662

100

0.44
  comFC/cflB Streptococcus pneumoniae Rx1

43.662

100

0.44
  comFC/cflB Streptococcus pneumoniae TIGR4

43.662

100

0.44
  comFC/cflB Streptococcus pneumoniae D39

43.662

100

0.44
  comFC Lactococcus lactis subsp. cremoris KW2

39.286

99.291

0.39
  comFC Latilactobacillus sakei subsp. sakei 23K

37.762

100

0.383