Detailed information NTG0833670

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QNH97_RS24295
• Genome accession: NZ_CP125957
• Coordinates: 5542774..5544120 (+)
• Length: 448 a.a.
• NCBI ID: WP_283554247.1
• Uniprot ID: -
• Organism: Pseudomonas sp. G2-4
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5537774..5549120

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QNH97_RS24270 (QNH97_24270)	pgeF	5537942..5538667 (-)	726	WP_283554242.1	peptidoglycan editing factor PgeF	-
QNH97_RS24275 (QNH97_24275)	rluD	5538664..5539626 (-)	963	WP_283554243.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
QNH97_RS24280 (QNH97_24280)	-	5539778..5540794 (+)	1017	WP_283554244.1	outer membrane protein assembly factor BamD	-
QNH97_RS24285 (QNH97_24285)	-	5540965..5541198 (+)	234	WP_283554245.1	PP0621 family protein	-
QNH97_RS24290 (QNH97_24290)	pilS	5541188..5542777 (+)	1590	WP_283554246.1	ATP-binding protein	Regulator
QNH97_RS24295 (QNH97_24295)	pilR	5542774..5544120 (+)	1347	WP_283554247.1	sigma-54 dependent transcriptional regulator	Regulator
QNH97_RS24300 (QNH97_24300)	-	5544308..5544673 (-)	366	WP_283554248.1	DUF6124 family protein	-
QNH97_RS24305 (QNH97_24305)	thiO	5545865..5546965 (-)	1101	WP_283554249.1	glycine oxidase ThiO	-
QNH97_RS24310 (QNH97_24310)	-	5547023..5547424 (-)	402	WP_283554250.1	type IV pilin protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50134.63 Da
• Isoelectric Point: 6.1394

>NTDB_id=833670 QNH97_RS24295 WP_283554247.1 5542774..5544120(+) (pilR) [Pseudomonas sp. G2-4]
MNIRSRQRILIVDDEPDIRELLEITLGRMKLGTRSAKNLAEAQSLLMDETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPSVATPAATIERCLLGDSPPMRSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRTSQRFVPVNCGAIPTELMESEFFGHRKGSFTGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIGLLA
DHMLQRLAANAGSPAVKLHPQALDALRNYRFPGNVRELENMLERAYTLCEHQQIEADDLRLAEGNGSAEAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=833670 QNH97_RS24295 WP_283554247.1 5542774..5544120(+) (pilR) [Pseudomonas sp. G2-4]
TTGAATATTCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATTCGCGAACTCCTGGAGATCACCCTGGG
AAGGATGAAACTCGGCACCCGCAGCGCCAAGAACCTCGCCGAGGCCCAAAGCCTGTTGATGGACGAAACCTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGCCTGGAGCTGGTGCAGCACATCCAGCAGCGTTACCCCCAACTTCCC
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACCGCCATCGACGCCCTCAAAGCCGGGGCCTTCGACTTCCTGACCAA
ACCAGTCGACCTGGGCCGCCTGCGGGAGCTGGTCACCAGCGCCTTGCGCCTGCCATCCGTCGCCACACCGGCCGCCACCA
TCGAGCGCTGCCTGCTGGGCGACTCCCCACCGATGCGCAGCGTACGCAAACAGATCGAAAAACTCGCCCGCAGCCAGGCG
CCGGTGTACATCAGCGGGGAGTCAGGCTGCGGCAAGGAACTGGTTGCCCGATTGATCCACGAACAAGGTCCCCGCACCAG
CCAGCGTTTTGTGCCGGTCAACTGTGGGGCCATTCCCACCGAGCTGATGGAAAGCGAGTTTTTCGGTCATCGAAAAGGCA
GTTTCACTGGCGCCATCGAAGACAAACCCGGGTTGTTCCAAGCAGCCCACGGCGGGACCCTGTTCCTCGACGAAGTGGCC
GACCTGCCCTTGGCCATGCAGGTCAAATTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCGCCGTCGGCGGCCAGCAGGA
AGAAGTGGTGGATGTACGCATCCTCTGCGCGACCCACAAGGACCTGGACGGTGAAGTCGCCGCCGGGCGCTTTCGCCAGG
ATCTGTACTACCGGCTTAACGTCATCGAACTGCGCGTGCCGCCATTGCGTGAACGCCGCGAAGACATTGGGCTGTTGGCC
GATCACATGCTCCAGCGCCTGGCGGCCAACGCCGGCAGCCCTGCGGTCAAGCTTCATCCCCAAGCGCTGGACGCCCTGCG
CAACTACCGCTTCCCGGGCAATGTGCGGGAACTGGAGAACATGCTCGAGCGGGCCTATACCCTTTGTGAGCATCAACAGA
TCGAAGCCGACGACCTGCGCCTGGCCGAGGGTAATGGCAGCGCTGAGGCGGGCAATCCCGACTTGATGCAGGTCGACAAC
CTGGAAGACTACCTGGAAGACGTCGAGCGCAAACTGATTCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGCTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAACTTGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.054	99.107	0.783
pilR	Acinetobacter baumannii strain A118	49.891	100	0.511