Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QNH97_RS24515 Genome accession   NZ_CP125957
Coordinates   5593013..5594380 (-) Length   455 a.a.
NCBI ID   WP_283554285.1    Uniprot ID   -
Organism   Pseudomonas sp. G2-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5588013..5599380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH97_RS24495 (QNH97_24495) yjiA 5588373..5589341 (-) 969 WP_283554281.1 GTPase -
  QNH97_RS29380 - 5589514..5589603 (+) 90 Protein_4832 metal ABC transporter ATP-binding protein -
  QNH97_RS24500 (QNH97_24500) - 5590036..5590233 (-) 198 WP_283554282.1 YbdD/YjiX family protein -
  QNH97_RS24505 (QNH97_24505) - 5590249..5592315 (-) 2067 WP_283554283.1 carbon starvation CstA family protein -
  QNH97_RS24510 (QNH97_24510) - 5592474..5592830 (+) 357 WP_283554284.1 PilZ domain-containing protein -
  QNH97_RS24515 (QNH97_24515) radA 5593013..5594380 (-) 1368 WP_283554285.1 DNA repair protein RadA Machinery gene
  QNH97_RS24520 (QNH97_24520) - 5594424..5594972 (-) 549 WP_283554286.1 ankyrin repeat domain-containing protein -
  QNH97_RS24525 (QNH97_24525) katB 5595036..5596577 (-) 1542 WP_283554287.1 catalase KatB -
  QNH97_RS24530 (QNH97_24530) mscL 5596860..5597273 (+) 414 WP_283554288.1 large-conductance mechanosensitive channel protein MscL -
  QNH97_RS24535 (QNH97_24535) - 5597316..5598092 (-) 777 WP_283554289.1 ferredoxin--NADP reductase -
  QNH97_RS24540 (QNH97_24540) - 5598385..5599098 (+) 714 WP_283554290.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48731.21 Da        Isoelectric Point: 6.8987

>NTDB_id=833671 QNH97_RS24515 WP_283554285.1 5593013..5594380(-) (radA) [Pseudomonas sp. G2-4]
MAKAKRMYGCTECGSTFPKWAGQCSECGAWNTLTETMVESGGAAAPTGRTGWAGQQAQIKTLAEVSVEEVPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSLATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=833671 QNH97_RS24515 WP_283554285.1 5593013..5594380(-) (radA) [Pseudomonas sp. G2-4]
ATGGCCAAGGCAAAGCGCATGTACGGCTGCACCGAGTGCGGTTCGACCTTTCCCAAATGGGCCGGCCAGTGCAGCGAGTG
CGGGGCCTGGAACACCCTGACTGAAACCATGGTGGAAAGCGGCGGTGCGGCGGCGCCCACCGGCCGTACCGGCTGGGCCG
GTCAGCAGGCGCAGATCAAGACCCTGGCGGAAGTCAGCGTTGAAGAAGTCCCGCGTTTTTCCACCGCCTCCGGTGAACTG
GACCGGGTGCTGGGCGGTGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGGGACCCGGGCATCGGTAAATCCACCAT
CCTCCTGCAAACCTTGTGCAGCCTCGCCACGCGGATGCCGGCGCTGTATGTCACCGGTGAGGAATCCCAGCAGCAAGTCG
CCATGCGGGCCCGACGCCTGGGACTGCCCCAGGATCAACTGCGGGTCATGACCGAGACCTGTATCGAAACCATCATCGCC
ACGGCCCGCCTGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACGATTTTTACTGAACAACTGCAATCGGCCCC
GGGCGGTGTGTCCCAGGTGCGCGAAAGCGCGGCGTTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TGGGCCACGTCACCAAAGAGGGTGCGTTGGCAGGGCCGCGGGTGCTGGAGCACATGGTCGACACGGTGTTGTATTTCGAA
GGCGAGTCTGATGGTCGTCTGCGTTTGTTGCGGGCCGTGAAGAACCGCTTCGGCGCCGTCAACGAGCTGGGTGTGTTCGG
CATGACCGACAAAGGCCTGAAAGAAGTCTCCAACCCTTCTGCGATCTTTCTGACGCGCGCCCAGGAAGAAGTGCCGGGCA
GCGTGGTCATGGCGACGTGGGAAGGCACTCGGCCGATGTTGGTGGAAGTGCAAGCGCTGGTGGATGACAGTCACTTGGCG
AACCCGCGTCGGGTCACCTTGGGCCTGGATCAGAATCGGCTCGCCATGCTGTTGGCCGTCCTGCACCGCCACGGCGGGAT
TCCAACTCACGACCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAAGTGCTGGAGACGGCGTCCGACCTGGCGCTGA
TGGCGGCGGTCATGTCCAGCCTGCGCAATCGCCCGCTGCCCCATGATCTGCTGGTGTTCGGCGAAGTGGGGCTGTCGGGG
GAAGTACGGCCGGTGCCCAGTGGCCAGGAGCGGCTCAAGGAAGCGGCCAAGCATGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAATGCACCGAAGGAAGCGCCGCCGGGGTTGCAGATCATTGCCGTGACACGCCTGGAGCAGGCGTTGGATGCGTTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.522

100

0.47
  radA Streptococcus pneumoniae R6

46.522

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.522

100

0.47
  radA Streptococcus pneumoniae D39

46.522

100

0.47
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466