Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   QNH97_RS24290 Genome accession   NZ_CP125957
Coordinates   5541188..5542777 (+) Length   529 a.a.
NCBI ID   WP_283554246.1    Uniprot ID   -
Organism   Pseudomonas sp. G2-4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5536188..5547777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH97_RS24270 (QNH97_24270) pgeF 5537942..5538667 (-) 726 WP_283554242.1 peptidoglycan editing factor PgeF -
  QNH97_RS24275 (QNH97_24275) rluD 5538664..5539626 (-) 963 WP_283554243.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QNH97_RS24280 (QNH97_24280) - 5539778..5540794 (+) 1017 WP_283554244.1 outer membrane protein assembly factor BamD -
  QNH97_RS24285 (QNH97_24285) - 5540965..5541198 (+) 234 WP_283554245.1 PP0621 family protein -
  QNH97_RS24290 (QNH97_24290) pilS 5541188..5542777 (+) 1590 WP_283554246.1 ATP-binding protein Regulator
  QNH97_RS24295 (QNH97_24295) pilR 5542774..5544120 (+) 1347 WP_283554247.1 sigma-54 dependent transcriptional regulator Regulator
  QNH97_RS24300 (QNH97_24300) - 5544308..5544673 (-) 366 WP_283554248.1 DUF6124 family protein -
  QNH97_RS24305 (QNH97_24305) thiO 5545865..5546965 (-) 1101 WP_283554249.1 glycine oxidase ThiO -
  QNH97_RS24310 (QNH97_24310) - 5547023..5547424 (-) 402 WP_283554250.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58867.59 Da        Isoelectric Point: 7.6548

>NTDB_id=833669 QNH97_RS24290 WP_283554246.1 5541188..5542777(+) (pilS) [Pseudomonas sp. G2-4]
MTTEASSPRVKQAQRLLRLYHLYRLSIGITLVLLISSNMDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFVAGGTPSAIGNLLIVSVAIGNTLLRGRIGLLIAAVATIGIVSSTFFLGLSDSNRPSSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVIGLEALNALILQRMRTGILVLDRERRVQLANESALNLLGMHDLVGQPID
DYSTALVERLQLWLNNPSLRPQSLTISGTGLTLQPSFIALGHNDQHQTLVFLEDLAQVAQHAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNTADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRAWLDQFVRQTRESATGH
QLLHLSIDPGDYTTLMDPDQLTQVLDNLLRNAWRHSAMRHEQAEAWLKLFIDPHSQLSTLDILDNGPGVTPDQQAHLFEP
FFTTSNQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=833669 QNH97_RS24290 WP_283554246.1 5541188..5542777(+) (pilS) [Pseudomonas sp. G2-4]
GTGACCACTGAGGCCTCAAGCCCACGCGTCAAACAGGCGCAGCGCCTGCTGCGTCTCTATCACCTGTACCGCCTGAGCAT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGGAGTTCGCCAACGACGACCTGCTGCGCA
GCGGCAGCTGGTTGTACTTGGTGCTGAACATCCTGCTGGTGGTGTTCCTTGAAAACACCCGCCGCCCTGCCCGGCTGTTC
GGCCTGGCACTCACCGATGTGCTGTTGCTGTCGTGGCTGTTCTTCGTCGCTGGCGGCACCCCCAGTGCCATCGGCAACCT
GCTTATCGTCTCGGTCGCCATCGGCAACACGCTGTTGCGCGGCCGAATCGGCCTGCTGATCGCCGCCGTAGCCACGATCG
GTATCGTCAGCTCGACGTTCTTCCTCGGCCTGAGCGATTCAAACCGTCCCAGCAGTTATCTGCAGGCCGGCACCCTGGGG
GCGCTGTGTTTTGCCGCCGCCCTGCTGGTGCAAGGCCTGACCCGGCGACTGGAAGCCAGCGAAACCCTGGCCGAGCAACG
CGCCAGCGAAGTGATCGGCCTCGAAGCGCTCAACGCGCTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTTGATC
GCGAGCGCCGGGTGCAATTGGCCAACGAAAGCGCGCTGAACCTGCTGGGCATGCACGACCTGGTCGGCCAGCCAATCGAC
GACTACTCCACGGCACTGGTCGAGCGCCTGCAACTCTGGCTGAACAACCCCAGCCTGCGCCCGCAGAGCCTGACCATCAG
CGGCACCGGCCTCACCCTGCAACCGAGCTTCATCGCCCTGGGGCACAACGACCAGCATCAAACCCTGGTATTCCTCGAAG
ACCTGGCCCAAGTTGCCCAGCATGCCCAGCAGCTCAAACTCGCCTCCCTCGGCCGCCTGACCGCCGGCATCGCCCACGAA
ATCCGCAACCCCTTGGGGGCAATCAGCCATGCGGCGCAATTGCTGCGCGAATCCGAGGAACTGAACACCGCGGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAACGAATGAATCGCGTCATTGAAAACGTCCTGCAACTGTCTCGCCGCCAGC
AAACCACGCCCCAACGCCTGGATCTGCGGGCCTGGCTCGACCAGTTCGTCCGTCAGACCCGCGAAAGCGCAACCGGGCAC
CAGCTATTGCACCTGAGTATCGATCCGGGCGACTACACCACGCTGATGGACCCCGACCAGTTGACCCAGGTGCTCGACAA
CCTGTTGCGCAACGCTTGGCGCCACAGCGCCATGCGTCATGAACAGGCCGAGGCCTGGCTGAAACTGTTCATCGACCCCC
ACAGCCAGTTATCCACCCTGGACATCCTCGACAACGGCCCCGGTGTGACACCGGACCAGCAAGCGCACCTGTTCGAACCC
TTCTTCACCACCAGCAACCAAGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.459

97.921

0.582