Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QMK46_RS21000 Genome accession   NZ_CP125372
Coordinates   4753695..4754330 (-) Length   211 a.a.
NCBI ID   WP_042560451.1    Uniprot ID   -
Organism   Pseudomonas germanica strain P9_87     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4748695..4759330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK46_RS20965 (QMK46_20960) - 4749096..4749566 (-) 471 WP_095048621.1 (2Fe-2S)-binding protein -
  QMK46_RS20970 (QMK46_20965) murB 4749812..4750831 (-) 1020 WP_320413364.1 UDP-N-acetylmuramate dehydrogenase -
  QMK46_RS20975 (QMK46_20970) - 4750828..4751292 (-) 465 WP_093435454.1 low molecular weight protein-tyrosine-phosphatase -
  QMK46_RS20980 (QMK46_20975) kdsB 4751292..4752056 (-) 765 WP_320413365.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QMK46_RS20985 (QMK46_20980) - 4752053..4752238 (-) 186 WP_003174668.1 Trm112 family protein -
  QMK46_RS20990 (QMK46_20985) lpxK 4752260..4753270 (-) 1011 WP_095125209.1 tetraacyldisaccharide 4'-kinase -
  QMK46_RS20995 (QMK46_20990) - 4753270..4753698 (-) 429 WP_093435463.1 biopolymer transporter ExbD -
  QMK46_RS21000 (QMK46_20995) exbB 4753695..4754330 (-) 636 WP_042560451.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QMK46_RS21005 (QMK46_21000) comA 4754432..4756666 (-) 2235 WP_320413366.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QMK46_RS21010 (QMK46_21005) - 4756803..4757321 (+) 519 WP_095048627.1 DUF2062 domain-containing protein -
  QMK46_RS21015 (QMK46_21010) - 4757465..4758244 (-) 780 WP_008087860.1 ABC transporter permease -
  QMK46_RS21020 (QMK46_21015) - 4758241..4759173 (-) 933 WP_093435472.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22941.07 Da        Isoelectric Point: 6.8771

>NTDB_id=831450 QMK46_RS21000 WP_042560451.1 4753695..4754330(-) (exbB) [Pseudomonas germanica strain P9_87]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=831450 QMK46_RS21000 WP_042560451.1 4753695..4754330(-) (exbB) [Pseudomonas germanica strain P9_87]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCGGCCATGGCGATTGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTTACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAACTCAAGGAATTGCGCGCCAATTCGCCGCTGGGGGAAATCCTCGCGGCGGGCCTGGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATTCATGAACTCGAGCGCTACAT
CAATGCTCTCGGCACTATCGCAGCCATGGCGCCATTACTGGGTCTGCTTGGCACCGTGCTGGGCATGATCGATATCTTCA
GCGCGTTCACTGGCTCCGGTATGACCACCAATGCCTCGGTGCTGGCAGGCGGTATCTCCAAGGCATTGATCACCACCGCT
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCATCGGTTCCTGCAACGCCGTATCGATGAATTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTTGAAGTGGTACAGGGCGACCGTGACGTTGACCTGGCCGAGGGCCGCGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853