Detailed information NTG0831451

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: QMK46_RS21005
• Genome accession: NZ_CP125372
• Coordinates: 4754432..4756666 (-)
• Length: 744 a.a.
• NCBI ID: WP_320413366.1
• Uniprot ID: -
• Organism: Pseudomonas germanica strain P9_87
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4749432..4761666

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMK46_RS20970 (QMK46_20965)	murB	4749812..4750831 (-)	1020	WP_320413364.1	UDP-N-acetylmuramate dehydrogenase	-
QMK46_RS20975 (QMK46_20970)	-	4750828..4751292 (-)	465	WP_093435454.1	low molecular weight protein-tyrosine-phosphatase	-
QMK46_RS20980 (QMK46_20975)	kdsB	4751292..4752056 (-)	765	WP_320413365.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
QMK46_RS20985 (QMK46_20980)	-	4752053..4752238 (-)	186	WP_003174668.1	Trm112 family protein	-
QMK46_RS20990 (QMK46_20985)	lpxK	4752260..4753270 (-)	1011	WP_095125209.1	tetraacyldisaccharide 4'-kinase	-
QMK46_RS20995 (QMK46_20990)	-	4753270..4753698 (-)	429	WP_093435463.1	biopolymer transporter ExbD	-
QMK46_RS21000 (QMK46_20995)	exbB	4753695..4754330 (-)	636	WP_042560451.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
QMK46_RS21005 (QMK46_21000)	comA	4754432..4756666 (-)	2235	WP_320413366.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
QMK46_RS21010 (QMK46_21005)	-	4756803..4757321 (+)	519	WP_095048627.1	DUF2062 domain-containing protein	-
QMK46_RS21015 (QMK46_21010)	-	4757465..4758244 (-)	780	WP_008087860.1	ABC transporter permease	-
QMK46_RS21020 (QMK46_21015)	-	4758241..4759173 (-)	933	WP_093435472.1	ABC transporter ATP-binding protein	-
QMK46_RS21025 (QMK46_21020)	-	4759307..4759930 (-)	624	WP_095125211.1	glutathione S-transferase family protein	-
QMK46_RS21030 (QMK46_21025)	-	4759974..4760633 (-)	660	WP_093435478.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81416.19 Da
• Isoelectric Point: 9.7123

>NTDB_id=831451 QMK46_RS21005 WP_320413366.1 4754432..4756666(-) (comA) [Pseudomonas germanica strain P9_87]
MRTGMMALAVGLLVAVFMPALPPVWLMLLLPVVALMLLPFRSYPLAFLLFGFTWASVGAQWALNDRLPAGLDGETRWVEG
RVVGLPQNSDGVVRFELADAHSRHEKLPSLMRLAWYAGPQVNSGERWRLAVKLKRPSGLRNPEAFDYEAWLLAQRIGATG
TIKDGQRLSEARWAWRDSIRQRLLSVDAQGRNGALAALVLGDGSGLSREDWQTLQDTGTVHLLVISGQHIGLLAALMYGL
VAGMARYGLWPLRWPWLPWACGLGFAAALGYGLLAGFDVPVQRACVMVGLVLLWRLRFRHLGAGWPLLLAFNAVLLLDPL
ASLRPGLWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALNLPISLSGPLANLLAVPWVSLAVLPPAL
LGTVLLPVPFVGAGLLWLAGGLIDGLFHALATIAGHWPAWIAPSIPAWVWVIGSLGAGLLLLPRGVPLRPLGWPLLLLLV
VPPRDQIDEGLADIWQLDVGQGLAILIRTRHHALLYDAGPRFGEFDLGERVVLPSLRKLSVEKLDLMLLSHADADHAGGA
LAISRGLTVDQVISGDPAGLPAQLNAEACASGQQWQWDGVRFQLWQWADADDSNQRSCVLQIEANGERLLLTGDIDSHAE
RVLLDGPLAVPTQWLQSPHHGSRSSSSMALLNVLKPESVLISRGHGNSFGHPHPTVLARYRKLGLHIYDSAEQGAIHLQL
GTFRAPRTMRHQRRFWRDPPALAR

Nucleotide

• Length: 2235 bp

>NTDB_id=831451 QMK46_RS21005 WP_320413366.1 4754432..4756666(-) (comA) [Pseudomonas germanica strain P9_87]
ATGCGCACAGGGATGATGGCGCTCGCAGTCGGTCTGCTGGTCGCGGTTTTTATGCCGGCATTACCGCCGGTCTGGTTGAT
GCTGTTGTTGCCGGTCGTGGCTTTGATGCTGCTGCCGTTTCGCAGCTATCCGCTGGCGTTTTTGCTGTTTGGCTTCACGT
GGGCCAGCGTCGGTGCGCAATGGGCGTTGAATGATCGTTTGCCGGCCGGGCTGGATGGCGAAACCCGGTGGGTTGAAGGG
CGGGTCGTCGGTTTGCCGCAGAACAGCGACGGCGTGGTGCGCTTCGAATTGGCTGATGCGCACTCGCGTCATGAAAAACT
GCCATCGCTGATGCGGCTTGCCTGGTACGCCGGGCCGCAGGTCAACAGCGGCGAGCGTTGGCGCTTGGCGGTCAAGCTCA
AGCGTCCCAGTGGATTGCGCAATCCCGAGGCCTTCGACTACGAGGCTTGGCTGCTGGCGCAACGCATTGGCGCCACCGGC
ACAATCAAGGACGGCCAGCGCTTGAGCGAAGCGCGCTGGGCCTGGCGTGACAGTATTCGCCAGCGTTTGCTGAGCGTGGA
TGCGCAGGGGCGAAATGGCGCATTGGCGGCGTTAGTGCTGGGTGACGGCTCGGGGCTCAGTCGCGAGGACTGGCAGACTC
TGCAGGACACCGGCACCGTGCACTTGCTGGTGATTTCCGGTCAGCACATCGGTTTGCTGGCGGCGCTGATGTATGGGCTG
GTCGCCGGCATGGCGCGATATGGCCTGTGGCCGCTGCGCTGGCCGTGGCTGCCGTGGGCCTGTGGTCTGGGGTTCGCGGC
AGCGCTCGGTTATGGCCTGCTTGCCGGGTTCGACGTGCCGGTGCAGCGCGCCTGCGTGATGGTCGGGCTGGTGCTGTTGT
GGCGCCTGCGCTTTCGTCATCTTGGCGCAGGATGGCCGTTGTTGCTGGCGTTCAACGCTGTGCTGTTGCTGGACCCGCTC
GCCAGTTTGCGTCCGGGTCTGTGGCTCTCGTTTGCGGCGGTGGCGGTGTTGATCTTTACCTTTGGCGGCCGCTTGGGTGC
GTGGCGCTGGTGGCAGACCTGGACGCGGGCGCAGTGGTTGATCGCGATCGGCTTATGTCCGGTGTTGCTGGCGCTGAATC
TGCCGATCAGCCTCAGCGGGCCGCTGGCCAATTTGCTTGCAGTGCCTTGGGTCAGTCTTGCGGTGTTACCGCCGGCGCTG
CTTGGAACCGTGTTGCTGCCTGTTCCTTTTGTCGGCGCCGGCCTGCTGTGGCTGGCCGGCGGTTTGATCGATGGGTTGTT
TCACGCGCTGGCGACGATTGCCGGGCATTGGCCGGCATGGATCGCACCCTCGATACCCGCTTGGGTCTGGGTCATTGGCA
GCCTCGGCGCCGGGTTGTTGCTATTGCCGCGCGGCGTGCCGCTGCGTCCATTGGGCTGGCCGTTGTTGCTGCTGCTGGTC
GTGCCGCCACGCGATCAGATAGATGAAGGATTGGCCGATATCTGGCAGCTTGATGTCGGCCAAGGCTTGGCCATCCTGAT
CCGGACCCGCCATCACGCGTTGCTCTACGATGCGGGGCCGCGCTTTGGTGAGTTCGATCTCGGCGAGCGTGTGGTGCTGC
CTTCATTGCGCAAACTGAGCGTGGAAAAACTCGATTTGATGCTGCTCAGCCATGCCGACGCCGATCACGCCGGCGGCGCT
TTGGCGATCAGCCGGGGTTTGACTGTCGATCAGGTAATCAGCGGTGACCCGGCGGGGCTGCCCGCGCAATTGAACGCCGA
AGCCTGTGCAAGTGGCCAGCAATGGCAATGGGACGGCGTACGTTTTCAACTCTGGCAGTGGGCGGACGCTGACGACAGCA
ATCAGCGTTCCTGCGTATTGCAGATCGAGGCCAATGGCGAGCGCCTGCTGCTGACCGGCGACATCGACAGCCATGCCGAA
CGCGTGCTGCTCGACGGTCCACTGGCCGTGCCGACGCAATGGCTGCAATCGCCCCATCATGGCAGCCGCAGTTCATCGTC
AATGGCGCTGCTCAACGTCTTGAAACCCGAGTCCGTGCTGATCTCTCGAGGTCATGGCAACTCTTTTGGCCATCCGCACC
CGACCGTGCTGGCGCGTTATCGCAAACTGGGCCTGCACATTTACGACAGTGCCGAGCAGGGCGCCATTCATCTGCAACTG
GGCACCTTCAGGGCGCCACGCACGATGCGTCATCAGCGGCGTTTCTGGCGTGATCCGCCCGCACTGGCCCGCTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.43	96.237	0.601
comA	Ralstonia pseudosolanacearum GMI1000	31.776	100	0.366