Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   OPT60_RS03085 Genome accession   NZ_CP125359
Coordinates   573549..574259 (+) Length   236 a.a.
NCBI ID   WP_084916255.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain UT_10236     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 568549..579259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPT60_RS03060 (OPT60_03060) - 569228..570223 (+) 996 WP_084916252.1 DUF3114 domain-containing protein -
  OPT60_RS03065 (OPT60_03065) - 570319..570966 (-) 648 WP_003057245.1 amino acid ABC transporter permease -
  OPT60_RS03070 (OPT60_03070) - 570981..571682 (-) 702 WP_003057191.1 amino acid ABC transporter permease -
  OPT60_RS03075 (OPT60_03075) - 571696..572496 (-) 801 WP_003057243.1 transporter substrate-binding domain-containing protein -
  OPT60_RS03080 (OPT60_03080) - 572496..573290 (-) 795 WP_084916254.1 amino acid ABC transporter ATP-binding protein -
  OPT60_RS03085 (OPT60_03085) vicR 573549..574259 (+) 711 WP_084916255.1 response regulator YycF Regulator
  OPT60_RS03090 (OPT60_03090) vicK 574252..575604 (+) 1353 WP_084916257.1 cell wall metabolism sensor histidine kinase VicK Regulator
  OPT60_RS03095 (OPT60_03095) vicX 575608..576417 (+) 810 WP_003059746.1 MBL fold metallo-hydrolase Regulator
  OPT60_RS03100 (OPT60_03100) rnc 577175..577867 (+) 693 WP_003057240.1 ribonuclease III -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27004.90 Da        Isoelectric Point: 4.9038

>NTDB_id=831212 OPT60_RS03085 WP_084916255.1 573549..574259(+) (vicR) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGCEAVTIFEEEKPDLIILDLMLPELDGLEVAKEIRKTSHVPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVE
LTHREFELLHHLANHMGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSYD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=831212 OPT60_RS03085 WP_084916255.1 573549..574259(+) (vicR) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
ATGAAAAAAATACTGATTGTGGATGATGAAAAACCGATTTCTGACATTATTAAGTTTAATTTGACAAAAGAAGGTTATGA
CATTGTTACAGCTTTTGATGGATGCGAAGCGGTAACAATTTTTGAAGAAGAAAAGCCAGATTTAATTATTCTTGATTTGA
TGCTCCCTGAGTTGGACGGTCTTGAAGTAGCCAAGGAAATTCGTAAAACCAGTCATGTCCCGATTATTATGCTGTCGGCT
AAGGATAGTGAGTTTGACAAGGTCATTGGTCTTGAAATTGGGGCAGATGATTATGTTACCAAACCCTTTTCAAATCGTGA
ACTATTAGCTCGTGTCAAGGCTCATTTACGTCGAACAGAAACGATCGAAACAGCCGTAGCAGAGGAAAATGCTTCTTCAG
GTTCACAAGAGTTAACCATTGGTAATTTACAAATTTTACCAGATGCTTTTGTGGCTAAAAAACATGGCAAAGAAGTGGAA
TTAACCCATCGTGAATTTGAATTATTACACCACCTGGCCAATCATATGGGTCAAGTGATGACACGAGAGCACTTGCTTGA
GACGGTTTGGGGCTATGATTACTTTGGCGATGTCCGTACTGTTGACGTGACGGTTCGTCGTCTGCGTGAAAAAATTGAAG
ACACACCAAGCCGTCCCGAATATATTTTAACGAGACGCGGTGTTGGGTACTACATGAAATCTTATGACTAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

90.254

100

0.903
  micA Streptococcus pneumoniae Cp1015

79.06

99.153

0.784
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.397

98.305

0.436
  covR Streptococcus salivarius strain HSISS4

44.397

98.305

0.436
  scnR Streptococcus mutans UA159

37.712

100

0.377