Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   QLH56_RS00620 Genome accession   NZ_CP125107
Coordinates   122904..123578 (-) Length   224 a.a.
NCBI ID   WP_003099507.1    Uniprot ID   -
Organism   Streptococcus iniae strain DFSM220524     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 117904..128578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH56_RS00595 (QLH56_00595) - 118083..119360 (-) 1278 WP_003099515.1 pyrimidine-nucleoside phosphorylase -
  QLH56_RS00600 (QLH56_00600) - 119347..119946 (-) 600 WP_003099513.1 class I SAM-dependent methyltransferase -
  QLH56_RS00605 (QLH56_00605) coaA 120207..121127 (+) 921 WP_003099512.1 type I pantothenate kinase -
  QLH56_RS00610 (QLH56_00610) rpsT 121187..121429 (+) 243 WP_080613191.1 30S ribosomal protein S20 -
  QLH56_RS00615 (QLH56_00615) ciaH 121601..122911 (-) 1311 WP_003099509.1 HAMP domain-containing sensor histidine kinase Regulator
  QLH56_RS00620 (QLH56_00620) ciaR 122904..123578 (-) 675 WP_003099507.1 response regulator transcription factor Regulator
  QLH56_RS00625 (QLH56_00625) - 123699..126236 (-) 2538 WP_003099506.1 M1 family metallopeptidase -
  QLH56_RS00630 (QLH56_00630) phoU 126298..126951 (-) 654 WP_003099503.1 phosphate signaling complex protein PhoU -
  QLH56_RS00635 (QLH56_00635) pstB 127006..127764 (-) 759 WP_003099501.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25562.41 Da        Isoelectric Point: 4.3757

>NTDB_id=829939 QLH56_RS00620 WP_003099507.1 122904..123578(-) (ciaR) [Streptococcus iniae strain DFSM220524]
MIKILLVEDDLSLSNSIFDFLDDFADVMQVFDGDEGFYEAESGVYDLILLDLMLPEKNGFQVLKELREKDIKTPVLIMTA
KESLDDKGHGFDLGADDYLTKPFYLEELKMRIQALLKRTGKMTTSQLSYGNISIDTERNMVKVGDTTIELLGKEYDLLIY
LLQNQNVILPKSQIFDRIWGFDSDTTISVVEVYVSKIRKKLKGTDFVDNLQTLRSVGYILKTNG

Nucleotide


Download         Length: 675 bp        

>NTDB_id=829939 QLH56_RS00620 WP_003099507.1 122904..123578(-) (ciaR) [Streptococcus iniae strain DFSM220524]
ATGATAAAAATATTACTTGTTGAAGATGATTTAAGTTTATCTAATTCGATTTTTGATTTTTTAGATGATTTTGCTGATGT
TATGCAGGTTTTTGATGGAGATGAAGGTTTTTATGAGGCTGAAAGTGGTGTTTATGATCTTATTCTCCTGGACTTAATGT
TACCTGAAAAAAATGGTTTTCAAGTCCTAAAAGAATTAAGAGAAAAAGACATCAAAACGCCTGTTCTTATTATGACTGCT
AAAGAAAGTCTTGACGATAAAGGGCATGGCTTTGACCTTGGAGCTGATGACTACCTAACCAAACCATTTTATTTAGAGGA
GCTAAAAATGCGTATTCAAGCCCTCTTGAAACGAACTGGTAAGATGACTACCAGTCAGCTATCTTATGGGAATATCAGTA
TTGATACTGAACGAAATATGGTAAAAGTCGGAGACACTACCATTGAGCTTCTTGGAAAAGAGTATGATTTACTCATTTAT
CTCCTTCAAAATCAAAATGTTATTTTACCTAAATCACAGATTTTTGACCGTATATGGGGATTCGACAGTGATACCACAAT
ATCAGTTGTAGAGGTTTATGTTTCAAAAATCAGAAAAAAACTAAAAGGGACAGATTTTGTAGACAACCTTCAAACGCTTA
GAAGTGTCGGATACATCTTAAAAACAAATGGCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

84.615

98.661

0.835
  ciaR Streptococcus pneumoniae D39

84.615

98.661

0.835
  ciaR Streptococcus pneumoniae R6

84.615

98.661

0.835
  ciaR Streptococcus pneumoniae TIGR4

84.615

98.661

0.835
  ciaR Streptococcus mutans UA159

84.163

98.661

0.83
  covR Lactococcus lactis subsp. lactis strain DGCC12653

38.767

100

0.393
  covR Streptococcus salivarius strain HSISS4

36.726

100

0.371