Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QMA14_RS03690 Genome accession   NZ_CP125087
Coordinates   743781..745310 (-) Length   509 a.a.
NCBI ID   WP_070712582.1    Uniprot ID   A0A1F0ULS5
Organism   Haemophilus parainfluenzae strain EL1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 738781..750310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA14_RS03660 (QMA14_03660) - 739507..740022 (+) 516 WP_005694713.1 hypothetical protein -
  QMA14_RS03665 (QMA14_03665) - 740019..740561 (+) 543 WP_005694712.1 hypothetical protein -
  QMA14_RS03670 (QMA14_03670) - 740561..740944 (+) 384 WP_005697438.1 pilus assembly protein PilP -
  QMA14_RS03675 (QMA14_03675) comE 740988..742328 (+) 1341 WP_065242968.1 type IV pilus secretin PilQ Machinery gene
  QMA14_RS03680 (QMA14_03680) - 742348..743037 (+) 690 WP_065242967.1 ComF family protein -
  QMA14_RS03685 (QMA14_03685) nfuA 743153..743737 (+) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -
  QMA14_RS03690 (QMA14_03690) comM 743781..745310 (-) 1530 WP_070712582.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QMA14_RS03695 (QMA14_03695) yihA 745440..746054 (-) 615 WP_032822378.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  QMA14_RS03700 (QMA14_03700) - 746167..747036 (+) 870 WP_049371348.1 DUF535 family protein -
  QMA14_RS03705 (QMA14_03705) oppF 747076..748074 (-) 999 WP_049371347.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  QMA14_RS03710 (QMA14_03710) - 748071..749042 (-) 972 WP_102704364.1 ABC transporter ATP-binding protein -
  QMA14_RS03715 (QMA14_03715) oppC 749052..749987 (-) 936 WP_049375809.1 oligopeptide ABC transporter permease OppC -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55807.20 Da        Isoelectric Point: 9.8426

>NTDB_id=829896 QMA14_RS03690 WP_070712582.1 743781..745310(-) (comM) [Haemophilus parainfluenzae strain EL1]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDGSRLKQFEFVGELALTGELRGVHGVIPAILAAQKAKRAPIIAYQNANEASLVSEQETYFAKNL
LEVVQFLNTQDKLPLASLLVQESSVRFSAKNHLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTALLP
EMTDSEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASLPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQVIRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSQQVREKVLKVREIQLARAGKINAYLSSKEIERDCKLQDKDSLFLENALNKLGLSVRAYHRILKVSRTIADLN
GEKEIQQPHLAEALGYRAMDRLLQKLSAA

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=829896 QMA14_RS03690 WP_070712582.1 743781..745310(-) (comM) [Haemophilus parainfluenzae strain EL1]
ATGTCTCTTGCCATTGTTTATAGCCGTGCCTCAATGGGCGTACAAGCCCCTCTTGTTACCATTGAGGTACACTTAAGTAA
CGGAAAACCTGGATTTACCTTAGTTGGCCTACCCGAAAAAACTGTAAAAGAAGCGCAAGATCGTGTCAGAAGTGCATTAA
TGAATGCGCAGTTCAAATATCCTGCCAAACGCATCACCGTAAATCTTGCACCGGCTGATTTACCCAAAGAAGGGGGACGA
TTTGATTTACCCATTGCGATAGGTATCTTGGCTGCATCAGATCAATTAGATGGTAGCCGTTTAAAACAATTTGAATTCGT
TGGTGAACTCGCATTAACGGGTGAATTACGTGGCGTACACGGTGTCATTCCTGCCATTTTAGCAGCTCAAAAAGCGAAAC
GCGCACCCATTATCGCTTATCAAAATGCCAATGAGGCGTCGCTTGTCTCAGAGCAAGAGACTTATTTCGCTAAAAACCTT
TTAGAGGTCGTGCAATTCTTAAATACTCAAGATAAATTACCTTTGGCCTCATTACTTGTACAAGAAAGTTCGGTCAGATT
TTCAGCTAAAAATCACTTAGATTTGACGGATATTATTGGTCAGCAACATGCGAAACGAGCACTAACAATAGCTGCCGCAG
GTCAGCACAACCTACTCTTTTTAGGTCCTCCCGGTACAGGTAAAACTATGTTAGCAAGTCGTCTCACCGCATTACTCCCT
GAAATGACTGATTCAGAAGCCATTGAAACCGCTTCGGTTACGAGTTTAGTACAAAATGAATTAAATTTTCATAACTGGAA
ACAACGACCGTTTCGAGCACCACATCATAGTGCCTCTTTGCCAGCCTTAGTAGGTGGAGGAACCATTCCAAAACCAGGCG
AAATATCGCTCGCACATAATGGCGTACTTTTTCTTGATGAATTGCCTGAGTTTGAGCGTAAAGTACTTGATGCACTCCGC
CAGCCATTAGAAAGTGGAGAAATTATTATTTCGCGAGCCAATGCTAAAATCCAATTTCCTGCTCGCTTTCAATTAGTTGC
GGCGATGAATCCAAGTCCAACGGGGCATTATACGGGAACACATAACCGCACCTCGCCACAACAAGTGATACGTTATTTAA
ATCGCCTTTCTGGCCCATTTTTAGATCGTTTTGATTTATCCATTGAAGTGCCCCTTCTGCCACAAGGTAGCTTACAGAAT
ACTGGAGATAGAGGCGAAACAAGCCAACAAGTAAGAGAAAAAGTGTTAAAAGTGAGAGAAATTCAACTTGCTCGAGCAGG
CAAGATCAATGCATATCTTTCAAGCAAAGAAATTGAACGAGACTGTAAATTACAAGATAAAGATTCACTATTTCTTGAGA
ATGCACTGAATAAGCTAGGGCTTTCAGTAAGAGCCTACCATCGAATTTTGAAAGTCTCACGCACAATTGCCGATTTGAAT
GGCGAAAAAGAGATACAACAACCTCATTTAGCAGAAGCGCTAGGATATCGGGCAATGGATCGGTTGTTACAGAAATTATC
TGCCGCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F0ULS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

91.716

99.607

0.914
  comM Glaesserella parasuis strain SC1401

79.29

99.607

0.79
  comM Vibrio cholerae strain A1552

67.126

99.804

0.67
  comM Vibrio campbellii strain DS40M4

65.815

100

0.658
  comM Legionella pneumophila str. Paris

52.183

99.018

0.517
  comM Legionella pneumophila strain ERS1305867

52.183

99.018

0.517
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.266

100

0.475