Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SIS06_RS21720 Genome accession   NZ_CP139188
Coordinates   4146557..4147351 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis strain H17-16     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4141557..4152351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS21695 (SIS06_21695) rocD 4142133..4143338 (-) 1206 WP_172861696.1 ornithine aminotransferase -
  SIS06_RS21700 (SIS06_21700) rocR 4143579..4144964 (+) 1386 WP_003244510.1 arginine utilization regulatory protein RocR -
  SIS06_RS21705 (SIS06_21705) - 4144946..4145107 (-) 162 Protein_4226 ATP-binding protein -
  SIS06_RS21710 (SIS06_21710) - 4145126..4145253 (-) 128 Protein_4227 hypothetical protein -
  SIS06_RS21715 (SIS06_21715) htrA 4145273..4146475 (-) 1203 WP_283933971.1 serine protease HtrC Regulator
  SIS06_RS21720 (SIS06_21720) vicX 4146557..4147351 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  SIS06_RS21725 (SIS06_21725) walI 4147373..4148215 (-) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  SIS06_RS21730 (SIS06_21730) walH 4148202..4149569 (-) 1368 WP_159377178.1 WalRK two-component regulatory system regulator WalH -
  SIS06_RS21735 (SIS06_21735) walK 4149559..4151394 (-) 1836 WP_106610980.1 cell wall metabolism sensor histidine kinase WalK -
  SIS06_RS21740 (SIS06_21740) walR 4151402..4152109 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=829894 SIS06_RS21720 WP_003226939.1 4146557..4147351(-) (vicX) [Bacillus subtilis strain H17-16]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=829894 SIS06_RS21720 WP_003226939.1 4146557..4147351(-) (vicX) [Bacillus subtilis strain H17-16]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTAATGGCACAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGGAAAATTGACACCGATCAAAAGTTTGTATTTCCAATGGAGAC
GGTGAAGTCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTTTCCCACGATGCGGCGGAACCGATGTTTTATGTATTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACAGGATGAAAGGCATTATCCGTTCAGCG
AATGTATTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGAAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACCGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53