Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H7679_RS05165 Genome accession   NZ_AP023392
Coordinates   1037254..1038096 (+) Length   280 a.a.
NCBI ID   WP_024395841.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT300     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1032254..1043096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7679_RS05130 (DAT300_09720) ylqF 1032254..1033105 (+) 852 WP_024395835.1 ribosome biogenesis GTPase YlqF -
  H7679_RS05135 (DAT300_09730) - 1033092..1033865 (+) 774 WP_024395836.1 ribonuclease HII -
  H7679_RS05140 (DAT300_09740) - 1033868..1034878 (+) 1011 WP_024395837.1 YdcF family protein -
  H7679_RS05145 (DAT300_09750) trhA 1034911..1035561 (-) 651 WP_002936498.1 PAQR family membrane homeostasis protein TrhA -
  H7679_RS05150 (DAT300_09760) - 1035551..1036102 (-) 552 WP_024395838.1 DUF1836 domain-containing protein -
  H7679_RS05155 (DAT300_09770) - 1036199..1036510 (-) 312 WP_024395839.1 rhodanese-like domain-containing protein -
  H7679_RS05160 (DAT300_09780) - 1036638..1037195 (+) 558 WP_024395840.1 sugar O-acetyltransferase -
  H7679_RS05165 (DAT300_09790) dprA 1037254..1038096 (+) 843 WP_024395841.1 DNA-processing protein DprA Machinery gene
  H7679_RS05170 (DAT300_09800) topA 1038189..1040282 (+) 2094 WP_024395842.1 type I DNA topoisomerase -
  H7679_RS05175 (DAT300_09810) rplJ 1040859..1041353 (+) 495 WP_002936486.1 50S ribosomal protein L10 -
  H7679_RS05180 (DAT300_09820) rplL 1041419..1041784 (+) 366 WP_002936483.1 50S ribosomal protein L7/L12 -
  H7679_RS05185 (DAT300_09830) - 1041980..1042276 (+) 297 WP_024397634.1 DUF5962 family protein -
  H7679_RS11605 - 1042314..1042385 (+) 72 Protein_983 class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31234.09 Da        Isoelectric Point: 8.4451

>NTDB_id=82955 H7679_RS05165 WP_024395841.1 1037254..1038096(+) (dprA) [Streptococcus suis strain DAT300]
MNNFELFKWKKAGLTNLNVNKVLAYQEKHGKKLTLRNVAVVSECKNPVLFMENYKNLDTKACREEFNKYPSFSILDDIYP
LALKQIYNPPVLLFYQGDLELLEKSKLAVVGTRNASKNGIQSVQKIIKELSNRFVIVSGLARGIDTAAHIASLKNGGQTI
AVIGTGLDNIYPKENKDLQTYIGKHHLVLTEYEAGAQPLKYHFPERNRIIAGLVEGLVVCEAKMRSGSLITCERALEEGR
EVYAIPGSIMDGKSDGCHHLIQEGAKCITSGLDIISEYQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=82955 H7679_RS05165 WP_024395841.1 1037254..1038096(+) (dprA) [Streptococcus suis strain DAT300]
ATGAATAATTTTGAATTGTTTAAATGGAAAAAAGCAGGTTTGACCAATCTTAATGTGAATAAAGTTTTGGCCTATCAAGA
AAAACACGGAAAAAAATTGACCTTGCGAAATGTCGCTGTAGTGTCTGAATGTAAAAATCCAGTTCTATTTATGGAAAATT
ATAAGAATCTAGATACAAAAGCCTGTCGCGAGGAATTTAATAAGTATCCATCATTTTCAATTTTAGATGACATCTATCCT
TTGGCGCTCAAACAGATTTACAATCCACCTGTACTTTTGTTTTATCAAGGGGATTTAGAATTGCTAGAAAAATCAAAGCT
GGCAGTTGTTGGTACACGAAATGCCAGTAAAAATGGTATCCAATCTGTTCAGAAAATTATTAAAGAATTGAGCAATCGTT
TTGTCATTGTTAGTGGTTTGGCAAGAGGAATTGACACAGCTGCTCATATTGCTAGCCTGAAAAATGGTGGACAAACCATT
GCTGTAATCGGAACAGGTTTAGATAATATTTATCCAAAAGAAAATAAAGATTTGCAGACCTATATTGGAAAACACCATTT
AGTATTAACAGAGTATGAAGCTGGTGCTCAGCCACTCAAATACCATTTCCCAGAACGTAACCGCATTATAGCTGGTTTGG
TGGAAGGATTGGTAGTCTGCGAAGCTAAAATGCGGTCTGGCAGCTTGATTACTTGTGAACGTGCCTTGGAAGAAGGAAGA
GAAGTCTATGCTATTCCAGGTTCCATTATGGACGGAAAATCAGATGGTTGTCATCATCTGATTCAAGAGGGAGCAAAGTG
CATCACATCAGGCTTGGACATCATTTCTGAGTACCAATTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

70.357

100

0.704
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.214

100

0.632
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.214

100

0.632
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.214

100

0.632
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.214

100

0.632
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.214

100

0.632
  dprA/cilB/dalA Streptococcus mitis SK321

63.214

100

0.632
  dprA Lactococcus lactis subsp. cremoris KW2

59.643

100

0.596
  dprA Bacillus subtilis subsp. subtilis str. 168

51.244

71.786

0.368
  dprA Legionella pneumophila strain ERS1305867

41.7

88.214

0.368

Multiple sequence alignment