Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QJS65_RS17615 Genome accession   NZ_CP124831
Coordinates   3366772..3367899 (-) Length   375 a.a.
NCBI ID   WP_282745867.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Sample7_7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3361772..3372899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJS65_RS17580 (QJS65_17580) flgL 3361955..3362866 (-) 912 WP_008348257.1 flagellar hook-associated protein FlgL -
  QJS65_RS17585 (QJS65_17585) flgK 3362875..3364395 (-) 1521 WP_058336981.1 flagellar hook-associated protein FlgK -
  QJS65_RS17590 (QJS65_17590) - 3364411..3364893 (-) 483 WP_007499977.1 flagellar protein FlgN -
  QJS65_RS17595 (QJS65_17595) flgM 3364912..3365175 (-) 264 WP_268357970.1 flagellar biosynthesis anti-sigma factor FlgM -
  QJS65_RS17600 (QJS65_17600) - 3365255..3365674 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  QJS65_RS17605 (QJS65_17605) comFC 3365731..3366417 (-) 687 WP_206428014.1 ComF family protein Machinery gene
  QJS65_RS17610 (QJS65_17610) - 3366414..3366707 (-) 294 WP_282745866.1 late competence development ComFB family protein -
  QJS65_RS17615 (QJS65_17615) comFA 3366772..3367899 (-) 1128 WP_282745867.1 DEAD/DEAH box helicase Machinery gene
  QJS65_RS17620 (QJS65_17620) - 3368271..3369113 (-) 843 WP_282745868.1 DegV family protein -
  QJS65_RS17625 (QJS65_17625) degU 3369325..3370014 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  QJS65_RS17630 (QJS65_17630) degS 3370079..3371254 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  QJS65_RS17635 (QJS65_17635) - 3371476..3372144 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 42868.84 Da        Isoelectric Point: 10.5177

>NTDB_id=828236 QJS65_RS17615 WP_282745867.1 3366772..3367899(-) (comFA) [Bacillus altitudinis strain Sample7_7]
MLGKVSECGFLYEWTGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYALNNGM
SVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDERLQF
AVLKSMKKTGVRIYLSATPSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKKLKRNRLPASTMNWLHEHITK
KKRVLLFVPSISTMKKVTHILQGQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAESPIF
SESALVQISGRAGRHSNFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=828236 QJS65_RS17615 WP_282745867.1 3366772..3367899(-) (comFA) [Bacillus altitudinis strain Sample7_7]
ATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACAGGTCCACAAAAGAAAGAAACAAGACAAGTTGAATT
AACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAAACAAATTTGATC
TGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGAATAAAATATGCGCTAAATAACGGAATG
AGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTCGAACCTCGAATGAGAAAGGCATTTCAAGGACTGAA
TATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCGCCGCTTATGATCGCTACAACCCATCAGCTAATGA
GATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAACGGCTTCAGTTT
GCTGTTTTAAAGTCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAATGCAAAAAGATGT
TGCTCGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTACCAACATTTCAATGGG
TTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAACATATCACAAAG
AAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGGTCAAGATGTAAA
TGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGGTACGATGTATTGG
TTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAGGTGGGCGTATTAGGTGCGGAATCTCCTATTTTT
TCAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGACATTCAAATTTTTTTAACGGAGACGTGTACTTTTTTCA
TTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAAAAGAGTTTTCTG
AAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(32-180)

Helicase conserved C-terminal domain (Helicase_C)

(236-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

55.946

98.667

0.552
  comFA/cflA Streptococcus pneumoniae Rx1

40.678

94.4

0.384
  comFA/cflA Streptococcus pneumoniae D39

40.678

94.4

0.384
  comFA/cflA Streptococcus pneumoniae R6

40.678

94.4

0.384
  comFA/cflA Streptococcus pneumoniae TIGR4

40.395

94.4

0.381
  comFA/cflA Streptococcus mitis NCTC 12261

40.113

94.4

0.379
  comFA Latilactobacillus sakei subsp. sakei 23K

38.315

98.133

0.376
  comFA Lactococcus lactis subsp. cremoris KW2

37.705

97.6

0.368
  comFA/cflA Streptococcus mitis SK321

38.983

94.4

0.368