Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QJS65_RS17625 Genome accession   NZ_CP124831
Coordinates   3369325..3370014 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain Sample7_7     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3364325..3375014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJS65_RS17590 (QJS65_17590) - 3364411..3364893 (-) 483 WP_007499977.1 flagellar protein FlgN -
  QJS65_RS17595 (QJS65_17595) flgM 3364912..3365175 (-) 264 WP_268357970.1 flagellar biosynthesis anti-sigma factor FlgM -
  QJS65_RS17600 (QJS65_17600) - 3365255..3365674 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  QJS65_RS17605 (QJS65_17605) comFC 3365731..3366417 (-) 687 WP_206428014.1 ComF family protein Machinery gene
  QJS65_RS17610 (QJS65_17610) - 3366414..3366707 (-) 294 WP_282745866.1 late competence development ComFB family protein -
  QJS65_RS17615 (QJS65_17615) comFA 3366772..3367899 (-) 1128 WP_282745867.1 DEAD/DEAH box helicase Machinery gene
  QJS65_RS17620 (QJS65_17620) - 3368271..3369113 (-) 843 WP_282745868.1 DegV family protein -
  QJS65_RS17625 (QJS65_17625) degU 3369325..3370014 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  QJS65_RS17630 (QJS65_17630) degS 3370079..3371254 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  QJS65_RS17635 (QJS65_17635) - 3371476..3372144 (+) 669 WP_017357860.1 YigZ family protein -
  QJS65_RS17640 (QJS65_17640) - 3372129..3373226 (+) 1098 WP_282745872.1 LCP family protein -
  QJS65_RS17645 (QJS65_17645) - 3373306..3374657 (+) 1352 WP_282745209.1 IS3 family transposase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=828237 QJS65_RS17625 WP_008348273.1 3369325..3370014(-) (degU) [Bacillus altitudinis strain Sample7_7]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=828237 QJS65_RS17625 WP_008348273.1 3369325..3370014(-) (degU) [Bacillus altitudinis strain Sample7_7]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATATTGCAAAAAATGAATGTAAACGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996