Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SGW61_RS07915 Genome accession   NZ_CP138664
Coordinates   1652343..1652945 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain DA70504     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1647343..1657945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW61_RS07895 yajC 1648839..1649099 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  SGW61_RS07900 tgt 1649118..1650257 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  SGW61_RS07905 queA 1650280..1651305 (-) 1026 WP_031928192.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SGW61_RS07910 ruvB 1651307..1652311 (-) 1005 WP_001005764.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  SGW61_RS07915 ruvA 1652343..1652945 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  SGW61_RS07920 - 1652959..1653414 (-) 456 WP_000368902.1 ACT domain-containing protein -
  SGW61_RS07925 obgE 1653427..1654719 (-) 1293 WP_338439028.1 GTPase ObgE -
  SGW61_RS07930 rpmA 1655076..1655360 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  SGW61_RS07935 - 1655372..1655692 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  SGW61_RS07940 rplU 1655698..1656006 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  SGW61_RS07945 mreD 1656242..1656772 (-) 531 WP_001259927.1 rod shape-determining protein MreD -
  SGW61_RS07950 mreC 1656772..1657614 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  SGW61_RS07955 - 1657813..1657932 (-) 120 WP_000840600.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=827288 SGW61_RS07915 WP_000271547.1 1652343..1652945(-) (ruvA) [Staphylococcus aureus strain DA70504]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=827288 SGW61_RS07915 WP_000271547.1 1652343..1652945(-) (ruvA) [Staphylococcus aureus strain DA70504]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425