Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QA539_RS10640 Genome accession   NZ_CP124591
Coordinates   2022178..2022696 (-) Length   172 a.a.
NCBI ID   WP_219493413.1    Uniprot ID   -
Organism   Macrococcus sp. CCM 8659     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2017178..2027696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA539_RS10615 (QA539_10595) - 2017588..2018856 (-) 1269 WP_219493408.1 nucleobase:cation symporter-2 family protein -
  QA539_RS10620 (QA539_10600) xpt 2018856..2019440 (-) 585 WP_099482390.1 xanthine phosphoribosyltransferase -
  QA539_RS10625 (QA539_10605) - 2019944..2020963 (+) 1020 WP_283722012.1 DUF2382 domain-containing protein -
  QA539_RS10630 (QA539_10610) - 2021064..2021678 (+) 615 WP_283722013.1 GNAT family N-acetyltransferase -
  QA539_RS10635 (QA539_10615) rpsR 2021903..2022145 (-) 243 WP_041636240.1 30S ribosomal protein S18 -
  QA539_RS10640 (QA539_10620) ssbA 2022178..2022696 (-) 519 WP_219493413.1 single-stranded DNA-binding protein Machinery gene
  QA539_RS10645 (QA539_10625) rpsF 2022721..2023011 (-) 291 WP_219494866.1 30S ribosomal protein S6 -
  QA539_RS10650 (QA539_10630) - 2023144..2023458 (-) 315 WP_419895211.1 hypothetical protein -
  QA539_RS10655 (QA539_10635) - 2024029..2025870 (+) 1842 WP_419895212.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19013.62 Da        Isoelectric Point: 4.8835

>NTDB_id=826543 QA539_RS10640 WP_219493413.1 2022178..2022696(-) (ssbA) [Macrococcus sp. CCM 8659]
MLNRVVLVGRLTKDPEYRVTTSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLHKGSLAGVDGRLQSR
SYDNQEGRKVYVTEVVCDSVQFLEPKNTNQSRTNSPSDDYSSYDQGSYGQTQGQNQNYQSSNNQQPNTSAPSNNPFANAA
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=826543 QA539_RS10640 WP_219493413.1 2022178..2022696(-) (ssbA) [Macrococcus sp. CCM 8659]
TTGCTTAACCGAGTTGTATTAGTTGGTCGTTTAACTAAAGATCCAGAATACAGAGTCACAACATCAGGTGTGTCAGTCGC
TACATTTACTTTAGCAGTAAATAGAACATTTACTAATGCACAAGGAGAACGTCAGGCTGATTTTATCAACTGTGTCGTAT
TCCGTAAGCAAGCTGAAAATGTTAATAATTTCTTGCATAAAGGTAGTTTAGCTGGGGTTGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGACGTAAAGTATACGTTACTGAGGTCGTTTGTGATTCAGTTCAATTCCTTGAACCGAAGAA
CACTAACCAATCACGTACGAACAGTCCGTCAGATGACTATTCTAGCTATGACCAAGGAAGTTACGGTCAGACACAAGGCC
AGAATCAAAACTATCAGTCATCAAATAATCAACAACCAAATACATCAGCACCATCAAATAACCCATTTGCCAATGCAGCA
GGGCCAATTGATATCAGTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

53.977

100

0.552
  ssb Vibrio cholerae strain A1552

33.871

100

0.366
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.628

0.366
  ssb Neisseria gonorrhoeae MS11

34.239

100

0.366
  ssb Neisseria meningitidis MC58

33.696

100

0.36