Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   QI031_RS05035 Genome accession   NZ_CP124543
Coordinates   1121435..1121800 (-) Length   121 a.a.
NCBI ID   WP_281484111.1    Uniprot ID   -
Organism   Halotia branconii CENA392     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1116435..1126800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI031_RS05025 (QI031_05025) - 1117935..1120874 (-) 2940 WP_281484109.1 methyl-accepting chemotaxis protein -
  QI031_RS05030 (QI031_05030) - 1120891..1121421 (-) 531 WP_281484110.1 chemotaxis protein CheW -
  QI031_RS05035 (QI031_05035) pilH 1121435..1121800 (-) 366 WP_281484111.1 response regulator Machinery gene
  QI031_RS05040 (QI031_05040) - 1121975..1123198 (-) 1224 WP_281484112.1 response regulator -
  QI031_RS05045 (QI031_05045) hmpF 1123660..1125423 (+) 1764 WP_281484113.1 pilus motility taxis protein HmpF -
  QI031_RS05050 (QI031_05050) tilS 1125560..1126543 (-) 984 WP_281484114.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13381.54 Da        Isoelectric Point: 5.1746

>NTDB_id=826372 QI031_RS05035 WP_281484111.1 1121435..1121800(-) (pilH) [Halotia branconii CENA392]
MSTVLIVEDSIAQREMITDLLKATGLKVTHASDGVEALEAIQTTPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=826372 QI031_RS05035 WP_281484111.1 1121435..1121800(-) (pilH) [Halotia branconii CENA392]
ATGAGTACAGTTCTGATCGTGGAAGACAGTATCGCCCAAAGAGAGATGATTACAGATCTCCTAAAAGCAACTGGCTTAAA
AGTTACCCATGCTAGTGACGGCGTAGAGGCATTGGAAGCAATTCAAACCACACCTCCTGACTTGGTGGTCTTAGATATCG
TTATGCCCCGCATGAACGGTTATGAAGTCTGCCGTCGATTAAAATCCGATCCCAAAACCCAAAACGTGCCTGTGGTCATG
TGTTCTTCTAAAGGCGAAGAATTTGATCGCTATTGGGGTATGAAGCAAGGTGCGGATGCTTATATAGCTAAACCGTTTCA
GCCAACTGAGTTGGTAGGAACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

77.686

100

0.777
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

40.351

94.215

0.38
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364