Detailed information NTG0826331

Bioinformatically predicted

Overview

• Name: comGF
• Type: Machinery gene
• Locus tag: QJV49_RS06410
• Genome accession: NZ_CP124538
• Coordinates: 1270288..1270734 (-)
• Length: 148 a.a.
• NCBI ID: WP_370632039.1
• Uniprot ID: -
• Organism: Lactococcus sp. NH2-7C
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1265288..1275734

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJV49_RS06375 (QJV49_06375)	-	1265405..1265782 (-)	378	WP_225512508.1	pyridoxamine 5'-phosphate oxidase family protein	-
QJV49_RS06380 (QJV49_06380)	-	1265987..1266853 (+)	867	WP_058204413.1	RluA family pseudouridine synthase	-
QJV49_RS06385 (QJV49_06385)	-	1266891..1267700 (-)	810	WP_014570791.1	metal ABC transporter permease	-
QJV49_RS06390 (QJV49_06390)	-	1267693..1268430 (-)	738	WP_012898617.1	metal ABC transporter ATP-binding protein	-
QJV49_RS06395 (QJV49_06395)	-	1268607..1269449 (-)	843	WP_225512507.1	metal ABC transporter substrate-binding protein	-
QJV49_RS06400 (QJV49_06400)	-	1269446..1269883 (-)	438	WP_010906313.1	zinc-dependent MarR family transcriptional regulator	-
QJV49_RS06405 (QJV49_06405)	comGG	1269965..1270240 (-)	276	WP_225512506.1	competence protein ComGG	Machinery gene
QJV49_RS06410 (QJV49_06410)	comGF	1270288..1270734 (-)	447	WP_370632039.1	competence type IV pilus minor pilin ComGF	Machinery gene
QJV49_RS06415 (QJV49_06415)	comGE	1270697..1270993 (-)	297	WP_225512504.1	competence type IV pilus minor pilin ComGE	Machinery gene
QJV49_RS06420 (QJV49_06420)	comGD	1270965..1271396 (-)	432	WP_225512503.1	competence type IV pilus minor pilin ComGD	Machinery gene
QJV49_RS06425 (QJV49_06425)	comGC	1271356..1271625 (-)	270	WP_281449176.1	competence type IV pilus major pilin ComGC	Machinery gene
QJV49_RS06430 (QJV49_06430)	comGB	1271753..1272826 (-)	1074	WP_225512580.1	competence type IV pilus assembly protein ComGB	Machinery gene
QJV49_RS06435 (QJV49_06435)	comGA	1272720..1273658 (-)	939	WP_225512501.1	competence type IV pilus ATPase ComGA	Machinery gene

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 17233.11 Da
• Isoelectric Point: 9.6696

>NTDB_id=826331 QJV49_RS06410 WP_370632039.1 1270288..1270734(-) (comGF) [Lactococcus sp. NH2-7C]
MERKFCDLNFKVRAFTLLECLVALLAISGSVLVISGLTKMLKEQMAISQSNSIKDWQIFCQQMRFELSGTKLDKVEQNFL
YVTKDKKLRFGFMSDDFRKTDDKGQGYQPMLYNIKTAKIQATKNLITIRIDFNQGGERTFIYQFPEDK

Nucleotide

• Length: 447 bp

>NTDB_id=826331 QJV49_RS06410 WP_370632039.1 1270288..1270734(-) (comGF) [Lactococcus sp. NH2-7C]
ATGGAAAGGAAATTTTGCGACTTGAACTTCAAAGTTAGGGCATTTACCTTGTTGGAGTGTTTGGTGGCACTTCTTGCAAT
TTCTGGATCAGTCCTTGTCATCTCAGGTTTAACAAAAATGTTGAAAGAACAAATGGCGATTAGTCAAAGTAATAGCATAA
AAGATTGGCAAATTTTCTGTCAGCAAATGCGTTTTGAACTCTCAGGAACAAAATTAGACAAAGTAGAACAGAATTTTCTG
TATGTAACTAAAGATAAAAAACTAAGGTTTGGTTTTATGAGTGATGATTTCCGTAAGACTGATGACAAAGGTCAGGGTTA
TCAGCCAATGCTTTATAATATAAAAACGGCTAAGATTCAAGCTACTAAAAATTTAATAACCATAAGAATTGATTTTAATC
AAGGAGGTGAAAGAACATTTATTTATCAATTTCCAGAAGACAAGTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (48-137)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF	Lactococcus lactis subsp. cremoris KW2	75.887	95.27	0.723
comYF	Streptococcus mutans UA140	48.227	95.27	0.459
comYF	Streptococcus mutans UA159	47.518	95.27	0.453
comGF/cglF	Streptococcus mitis SK321	41.549	95.946	0.399
comGF/cglF	Streptococcus pneumoniae Rx1	40.141	95.946	0.385
comGF/cglF	Streptococcus pneumoniae D39	40.141	95.946	0.385
comGF/cglF	Streptococcus pneumoniae R6	40.141	95.946	0.385
comGF/cglF	Streptococcus pneumoniae TIGR4	40.141	95.946	0.385
comGF/cglF	Streptococcus mitis NCTC 12261	40.141	95.946	0.385