Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   skT53_RS12815 Genome accession   NZ_AP023366
Coordinates   2368293..2368787 (+) Length   164 a.a.
NCBI ID   WP_200757554.1    Uniprot ID   A0A7I8DF63
Organism   Effusibacillus dendaii strain skT53     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2363293..2373787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  skT53_RS12790 (skT53_24850) - 2363578..2363778 (+) 201 WP_200757544.1 cold-shock protein -
  skT53_RS12795 (skT53_24860) - 2363898..2365352 (+) 1455 WP_200757546.1 DEAD/DEAH box helicase -
  skT53_RS12800 (skT53_24870) - 2365412..2365759 (-) 348 Protein_2488 peroxiredoxin family protein -
  skT53_RS19020 - 2365772..2365912 (-) 141 WP_200757550.1 peroxiredoxin -
  skT53_RS12810 (skT53_24900) ychF 2366864..2367964 (+) 1101 WP_200757552.1 redox-regulated ATPase YchF -
  skT53_RS19230 - 2368016..2368114 (+) 99 WP_404828864.1 hypothetical protein -
  skT53_RS12815 (skT53_24910) ssbA 2368293..2368787 (+) 495 WP_200757554.1 single-stranded DNA-binding protein Machinery gene
  skT53_RS12820 (skT53_24920) - 2368875..2370137 (-) 1263 WP_404828866.1 CynX/NimT family MFS transporter -
  skT53_RS12825 (skT53_24930) - 2370331..2370777 (+) 447 WP_200757556.1 MarR family winged helix-turn-helix transcriptional regulator -
  skT53_RS12830 (skT53_24940) - 2371049..2371543 (-) 495 WP_200757557.1 DUF2062 domain-containing protein -
  skT53_RS12835 (skT53_24950) - 2371583..2372959 (-) 1377 WP_200757558.1 dipeptidase -
  skT53_RS12840 (skT53_24960) - 2373040..2373225 (+) 186 WP_200757559.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17697.59 Da        Isoelectric Point: 4.8195

>NTDB_id=82596 skT53_RS12815 WP_200757554.1 2368293..2368787(+) (ssbA) [Effusibacillus dendaii strain skT53]
MLNRIILIGRLTADPELRYTSSGTAVASFTLAIDRPRVNQMGERETDFINIVVWQKLGELCAQYLRKGRLAAVEGRLQIR
SYENKEGQRVRVAEVVADNVRFLDRGDNSGSFEGSGFGAAGGGTGNSGFGGSSGGRGRSNNPGNDDPFIDDGRPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=82596 skT53_RS12815 WP_200757554.1 2368293..2368787(+) (ssbA) [Effusibacillus dendaii strain skT53]
ATGCTGAATCGGATTATCCTGATCGGTCGTTTGACGGCTGACCCTGAACTGCGATATACATCGTCGGGCACAGCGGTGGC
ATCATTTACGTTGGCGATTGACCGTCCGCGAGTAAACCAAATGGGGGAGCGCGAAACCGATTTTATTAATATTGTGGTGT
GGCAGAAACTGGGCGAGCTGTGTGCCCAGTATCTGAGAAAAGGCCGCTTGGCAGCGGTGGAAGGCCGCCTGCAAATCCGC
AGTTACGAGAATAAAGAAGGACAACGGGTTCGCGTGGCGGAAGTAGTGGCGGACAATGTACGGTTTCTTGACCGCGGCGA
TAATTCCGGCAGTTTTGAAGGCTCCGGCTTCGGCGCTGCTGGCGGAGGCACAGGCAACAGCGGATTTGGAGGCTCTTCCG
GTGGACGGGGACGCAGCAACAATCCGGGGAATGACGATCCGTTTATCGATGACGGCCGACCGATCGATATCTCGGACGAC
GATTTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7I8DF63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.651

100

0.573
  ssb Latilactobacillus sakei subsp. sakei 23K

46.471

100

0.482
  ssb Neisseria meningitidis MC58

33.88

100

0.378
  ssb Neisseria gonorrhoeae MS11

33.88

100

0.378
  ssb Glaesserella parasuis strain SC1401

33.708

100

0.366

Multiple sequence alignment